Thoughts on adding motif results to amino acid similarity?

[n-hal]

I.e. in when clustering TCRs on amino-acid similarity it might be nice to return a string that encapsulates the conserved sequence, with a wild-card character (maybe %D:N, for example suggesting that substitutions between D:N in the blosum matrix would be tolerated in this group).

If this is of any interest I would be happy to contribute to it.

[grst]

Hi @n-hal,

in principle this is of interest. Could you elaborate whot that string would look like?

There's a long-standing request to add sequence logos #12 which might go into the same direction?