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45 Open 65 Closed
45 Open 65 Closed
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Issues list

Selecting specific stains when reading merscope files into a sdata object.
#250 opened Dec 12, 2024 by omiethescientist
In .geojson parsed, the index should be parsed from .geojson
#249 opened Dec 12, 2024 by LucaMarconato
2
Xenium Ranger 3.0.1.1 after Cellpose resegmentation - "ValueError: A linearring requires at least 4 coordinates."
#245 opened Dec 2, 2024 by Lem-P
3
Update MACSima reader when stitching is supported
#243 opened Nov 27, 2024 by melonora
1
Visium HD alignment sometimes require a projective transformation, affine not enough
#242 opened Nov 22, 2024 by LucaMarconato
1
1
Xenium cell segmentation mask export requires coordinate flipping among y-axis
#240 opened Nov 18, 2024 by matt-sd-watson
CLI for conversion using standard technology readers
#238 opened Nov 13, 2024 by chiarasch
Missing tiles in Xenium H&E image
#235 opened Nov 6, 2024 by marcovarrone
Cannot read Visium HD data using spatialdata-io (Recurrent error). Data is non-zarr format.
#252 opened Nov 6, 2024 by ankshe91
2 of 3 tasks
13
Issues with reading in non zarr format Visium HD data in python
#251 opened Nov 5, 2024 by ankshe
2 of 3 tasks
1
Add CLI for conversions from and to standard types (.png, .tiff, .geojson, ...)
#231 opened Nov 1, 2024 by LucaMarconato
2 tasks
2
Reduce readers' memory consumption
#229 opened Oct 28, 2024 by marcovarrone
Remove dummy channel from xenium xenium
#226 opened Oct 23, 2024 by LucaMarconato
Importing Mass Spec Imaging Data into SpatialData
#225 opened Oct 23, 2024 by blakesells7
visium parsing function doesn't include scaling factors information from JSON like how scanpy or squidpy does
#223 opened Oct 21, 2024 by matt-sd-watson
We're storing spot locations as int64 (and maybe more) - should be sth smaller
#220 opened Oct 10, 2024 by timtreis
3
Visium_HD errors
#218 opened Oct 6, 2024 by jwweii
1
visium_hd() Error
#217 opened Oct 3, 2024 by Demond-dev
2
Bug in v0.1.5 visium_hd reader
#216 opened Oct 3, 2024 by t-a-m-i
2
cosmx - ValueError: Affine matrix must be homogeneous.
#213 opened Oct 2, 2024 by jamesboot
7
Handling empty prefix
#212 opened Sep 27, 2024 by hiraksarkar
4
Merscope - not loading vpt output
#208 opened Sep 18, 2024 by MathieuBo
1
New Xenium 5K output bundle incompatible with Squidpy
#221 opened Sep 15, 2024 by SciComp8
@LLehner
1
Export the real global coordinates of cells (Xenium)
#205 opened Sep 9, 2024 by nkuweili
1
Confusion on constructing SpatialData object from the ground up
#203 opened Sep 6, 2024 by MiTPenguin
2
ProTip! Updated in the last three days: updated:>2024-12-21.