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30 Open 82 Closed
30 Open 82 Closed
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Issues list

Add new hexlogo
#158 opened Dec 14, 2024 by selkamand
Drop shorthand anonymous function calls High Priority
#154 opened Nov 25, 2024 by selkamand
Improve ggoncoplot description
#151 opened Nov 25, 2024 by selkamand
options$fontsize_metadata_text should probably be options$fontsize_y_title
#150 opened Nov 24, 2024 by selkamand
1
Update citation() to JOSS paper
#146 opened Nov 18, 2024 by selkamand
Readme Fixes
#145 opened Sep 27, 2024 by selkamand
plotsize_tmb_rel_height should default to 0 if the plot isn't shown
#137 opened Jul 30, 2024 by selkamand
Add numeric metadata arg to the readme examples
#122 opened Jul 6, 2024 by selkamand
make beautification of guide titles optional
#120 opened Jul 6, 2024 by selkamand
1
expose genebar x axis font size controls
#108 opened Jun 18, 2024 by selkamand
Even when TMB axis is not logged colours mutationtype colours are not automatically being added
#107 opened Jun 18, 2024 by selkamand
Add a vignette example describing how you would use ggoncoplot with expression data / microbiome data
#96 opened Jun 17, 2024 by selkamand
When copying text to clipboard we should strip html characters out (e.g. <br>>
#86 opened Feb 6, 2024 by selkamand
Sorting of sample IDs should take pathways into account
#78 opened Apr 13, 2023 by selkamand
Turn full usage vignette into a R book hosted elsewhere
#69 opened Mar 2, 2023 by selkamand
1
Pathway fix: try setting strip.placement = 'outside' for TMB/sample metadata lacking facets
#66 opened Feb 10, 2023 by selkamand
1
Add option to Sort pathways by total distinct samples with any gene in pathway mutated
#60 opened Feb 7, 2023 by selkamand
1
Recreate all tests using simulated data instead of large GBM dataset
#57 opened Feb 4, 2023 by selkamand
Add option to avoid collapsing mutation_type into 'multi-hit' if all mutations are the same type
#54 opened Jan 31, 2023 by selkamand
Shorten error message when lots of samples with metadata have no mutations
#53 opened Jan 31, 2023 by selkamand
expose margin control and na_marker options of gg
#52 opened Jan 31, 2023 by selkamand
show_all_samples bug - shows sample with mutation last, after all the samples missing mutational data were shown
#51 opened Jan 31, 2023 by selkamand
Expose property of gg1d that lets you control vertical space between metadata tileplots
#49 opened Jan 30, 2023 by selkamand
fix plotting unit tests of plots: expect_snapshot to vdiffr
#44 opened Jan 29, 2023 by selkamand
Clinical annotation y axis text too far awar
#41 opened Jan 29, 2023 by selkamand
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