Merge pull request #51 from eseiler/infra/namespace #203
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Coverage | |
| on: | |
| push: | |
| branches: | |
| - 'main' | |
| pull_request: | |
| types: | |
| - unlabeled | |
| workflow_dispatch: | |
| concurrency: | |
| group: coverage-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: false | |
| env: | |
| TZ: Europe/Berlin | |
| defaults: | |
| run: | |
| shell: bash -Eexuo pipefail {0} | |
| jobs: | |
| build: | |
| name: ${{ matrix.name }} | |
| runs-on: ubuntu-22.04 | |
| timeout-minutes: 120 | |
| if: github.repository_owner == 'seqan' || github.event_name == 'workflow_dispatch' || github.event.label.name == 'lint' | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| include: | |
| - name: "gcc13" | |
| compiler: "gcc-13" | |
| build: coverage | |
| build_type: Coverage | |
| steps: | |
| # How many commits do we need to fetch to also fetch the branch point? | |
| - name: Get fetch depth | |
| id: fetch_depth | |
| run: echo "depth=$(( ${{ github.event.pull_request.commits }} + 2 ))" >> $GITHUB_OUTPUT | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: ${{ steps.fetch_depth.outputs.depth }} | |
| submodules: true | |
| - name: Setup toolchain | |
| uses: seqan/actions/setup-toolchain@main | |
| with: | |
| compiler: ${{ matrix.compiler }} | |
| ccache_size: 525M | |
| - name: Install CMake | |
| uses: seqan/actions/setup-cmake@main | |
| with: | |
| cmake: 3.16.9 | |
| - name: Install gcovr | |
| run: | | |
| sudo update-alternatives --install /usr/bin/gcov gcov /usr/bin/${CC/gcc/gcov} 100 | |
| pip install gcovr==6.0 | |
| - name: Configure tests | |
| run: | | |
| mkdir build | |
| cd build | |
| cmake ../test/${{ matrix.build }} -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} \ | |
| -DHIBF_NATIVE_BUILD=OFF \ | |
| -DHIBF_VERBOSE_TESTS=OFF | |
| make -j2 gtest_build | |
| - name: Build tests | |
| env: | |
| CCACHE_IGNOREOPTIONS: "-fprofile-abs-path" | |
| run: | | |
| ccache -z | |
| cd build | |
| make -k -j2 | |
| ccache -sv | |
| - name: Run tests | |
| run: | | |
| cd build | |
| ctest . -j2 --output-on-failure | |
| - name: Generate coverage report | |
| run: | | |
| gcovr --gcov-executable ${{ github.workspace }}/.github/workflows/scripts/gcov.sh \ | |
| --root ${{ github.workspace }}/test/coverage \ | |
| ${{ github.workspace }}/build \ | |
| --filter ${{ github.workspace }}/include \ | |
| --filter ${{ github.workspace }}/test/include \ | |
| --filter ${{ github.workspace }}/src \ | |
| --exclude ${{ github.workspace }}/include/hibf/contrib \ | |
| --exclude-lines-by-pattern '^\s*$' \ | |
| --exclude-lines-by-pattern '^\s*};$' \ | |
| --exclude-unreachable-branches \ | |
| --exclude-throw-branches \ | |
| --exclude-noncode-lines \ | |
| -j 2 \ | |
| --xml \ | |
| --output ${{ github.workspace }}/build/coverage_report.xml | |
| - name: Submit coverage build | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: ${{ github.workspace }}/build/coverage_report.xml | |
| fail_ci_if_error: false |