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[FIX] Actually reduce memory usage #192

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[FIX] Actually reduce memory usage #192

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10 changes: 5 additions & 5 deletions src/hierarchical_interleaved_bloom_filter.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -85,7 +85,7 @@ size_t hierarchical_build(hierarchical_interleaved_bloom_filter & hibf,
// initialize lower level IBF
size_t const max_bin_tbs = initialise_max_bin_kmers();
ibf = construct_ibf(parent_kmers, kmers, max_bin_tbs, current_node, data, is_root);
kmers.clear(); // reduce memory peak
kmers = robin_hood::unordered_flat_set<uint64_t>{}; // reduce memory peak

// parse all other children (merged bins) of the current ibf
auto loop_over_children = [&]()
Expand Down Expand Up @@ -123,16 +123,16 @@ size_t hierarchical_build(hierarchical_interleaved_bloom_filter & hibf,
{
auto & child = children[index];

robin_hood::unordered_flat_set<uint64_t> kmers{};
size_t const ibf_pos = hierarchical_build(hibf, kmers, child, data, false);
robin_hood::unordered_flat_set<uint64_t> local_kmers{};
size_t const ibf_pos = hierarchical_build(hibf, local_kmers, child, data, false);
auto parent_bin_index = child.parent_bin_index;
{
size_t const mutex_id{parent_bin_index / 64};
std::lock_guard<std::mutex> guard{local_ibf_mutex[mutex_id]};
technical_bin_to_ibf_id[parent_bin_index] = ibf_pos;
build::insert_into_ibf(kmers, 1, parent_bin_index, ibf, data.fill_ibf_timer);
build::insert_into_ibf(local_kmers, 1, parent_bin_index, ibf, data.fill_ibf_timer);
if (!is_root)
build::update_parent_kmers(parent_kmers, kmers, data.merge_kmers_timer);
build::update_parent_kmers(parent_kmers, local_kmers, data.merge_kmers_timer);
}
}
};
Expand Down