[FIX] Fix input pathways for inser and delete. #95
Workflow file for this run
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| name: CI on Linux | |
| on: | |
| push: | |
| branches: | |
| - 'master' | |
| - 'main' | |
| pull_request: | |
| concurrency: | |
| group: linux-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| CMAKE_VERSION: 3.10.3 | |
| SEQAN3_NO_VERSION_CHECK: 1 | |
| TZ: Europe/Berlin | |
| defaults: | |
| run: | |
| shell: bash -ex {0} | |
| jobs: | |
| build: | |
| name: ${{ matrix.name }} | |
| runs-on: ubuntu-22.04 | |
| timeout-minutes: 120 | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| include: | |
| - name: "Coverage gcc12" | |
| cxx: "g++-12" | |
| cc: "gcc-12" | |
| build: coverage | |
| build_type: Coverage | |
| - name: "gcc12" | |
| cxx: "g++-12" | |
| cc: "gcc-12" | |
| build_type: Release | |
| - name: "gcc11" | |
| cxx: "g++-11" | |
| cc: "gcc-11" | |
| build_type: Release | |
| - name: "gcc10" | |
| cxx: "g++-10" | |
| cc: "gcc-10" | |
| build_type: Release | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| path: needle | |
| fetch-depth: 2 | |
| submodules: recursive | |
| - name: Add package source | |
| run: bash ./needle/lib/seqan3/.github/workflows/scripts/configure_apt.sh | |
| - name: Install CMake | |
| run: bash ./needle/lib/seqan3/.github/workflows/scripts/install_cmake.sh | |
| - name: Install ccache | |
| run: sudo apt-get install --yes ccache | |
| - name: Install compiler ${{ matrix.cxx }} | |
| run: sudo apt-get install --yes ${{ matrix.cxx }} | |
| - name: Install lcov | |
| if: matrix.build == 'coverage' | |
| run: | | |
| sudo apt-get install --yes lcov | |
| sudo update-alternatives --install /usr/bin/gcov gcov /usr/bin/gcov-12 100 | |
| - name: Load ccache | |
| uses: actions/cache@v3 | |
| with: | |
| path: .ccache | |
| key: ${{ runner.os }}-${{ matrix.name }}-ccache-${{ github.ref }}-${{ github.run_number }} | |
| # Restoring: From current branch, otherwise from base branch, otherwise from any branch. | |
| restore-keys: | | |
| ${{ runner.os }}-${{ matrix.name }}-ccache-${{ github.ref }} | |
| ${{ runner.os }}-${{ matrix.name }}-ccache-${{ github.base_ref }} | |
| ${{ runner.os }}-${{ matrix.name }}-ccache- | |
| - name: Tool versions | |
| run: | | |
| env cmake --version | |
| env ${{ matrix.cxx }} --version | |
| - name: Configure tests | |
| env: | |
| CXX: ${{ matrix.cxx }} | |
| CC: ${{ matrix.cc }} | |
| run: | | |
| mkdir build | |
| cd build | |
| cmake ../needle -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} -DCMAKE_CXX_FLAGS="${{ matrix.cxx_flags }} -Wno-interference-size" | |
| - name: Build tests | |
| env: | |
| CCACHE_BASEDIR: ${{ github.workspace }} | |
| CCACHE_DIR: ${{ github.workspace }}/.ccache | |
| CCACHE_COMPRESS: true | |
| CCACHE_COMPRESSLEVEL: 6 | |
| CCACHE_MAXSIZE: 500M | |
| run: | | |
| ccache -p || true | |
| cd build | |
| make -k -j2 api_test cli_test | |
| ccache -s || true | |
| - name: Generate coverage baseline | |
| if: matrix.build == 'coverage' | |
| run: | | |
| lcov --directory ./build/ --zerocounters | |
| lcov --directory ./build/ --capture --initial --output-file ./build/coverage_report.baseline | |
| - name: Run tests | |
| run: | | |
| cd build | |
| ctest . -j2 --output-on-failure | |
| - name: Generate coverage report | |
| if: matrix.build == 'coverage' | |
| run: | | |
| lcov --directory ./build/ --capture --output-file ./build/coverage_report.captured | |
| lcov -a ./build/coverage_report.baseline -a ./build/coverage_report.captured --output-file ./build/coverage_report.total | |
| lcov --remove ./build/coverage_report.total '/usr/*' '${{ github.workspace }}/needle/lib/*' '${{ github.workspace }}/needle/test/*' '${{ github.workspace }}/build/vendor/*' --output-file ./build/coverage_report | |
| - name: Submit coverage report | |
| if: matrix.build == 'coverage' | |
| uses: codecov/codecov-action@v2 | |
| with: | |
| files: ${{ github.workspace }}/build/coverage_report | |
| root_dir: ${{ github.workspace }}/needle |