[FIX] Exact search: lower bound for error rate #109
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI on Linux | |
| on: | |
| push: | |
| branches: | |
| # Push events to branches matching refs/heads/master | |
| - 'master' | |
| pull_request: | |
| workflow_dispatch: | |
| env: | |
| CMAKE_VERSION: 3.16.9 | |
| SEQAN3_NO_VERSION_CHECK: 1 | |
| TZ: Europe/Berlin | |
| defaults: | |
| run: | |
| shell: bash -ex {0} | |
| jobs: | |
| build: | |
| name: ${{ matrix.name }} | |
| runs-on: ubuntu-20.04 | |
| timeout-minutes: 120 | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| include: | |
| - name: "gcc11" | |
| cxx: "g++-11" | |
| cc: "gcc-11" | |
| build: unit | |
| build_type: Release | |
| - name: "gcc10" | |
| cxx: "g++-10" | |
| cc: "gcc-10" | |
| build: unit | |
| build_type: Release | |
| steps: | |
| - name: Set repository name | |
| run: echo "REPOSITORY_NAME=$(echo '${{ github.repository }}' | awk -F '/' '{print $2}')" >> $GITHUB_ENV | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| path: ${{ env.REPOSITORY_NAME }} | |
| fetch-depth: 2 | |
| submodules: recursive | |
| - name: Add package source | |
| run: bash ./${{ env.REPOSITORY_NAME }}/lib/seqan3/.github/workflows/scripts/configure_apt.sh | |
| - name: Install CMake | |
| run: bash ./${{ env.REPOSITORY_NAME }}/lib/seqan3/.github/workflows/scripts/install_cmake.sh | |
| - name: Install ccache | |
| run: | | |
| conda install --yes --override-channels --channel conda-forge ccache | |
| sudo ln -s $CONDA/bin/ccache /usr/bin/ccache | |
| - name: Install compiler ${{ matrix.cxx }} | |
| run: sudo apt-get install --yes ${{ matrix.cxx }} | |
| - name: Load ccache | |
| uses: actions/cache@v3 | |
| with: | |
| path: .ccache | |
| key: ${{ runner.os }}-${{ matrix.name }}-ccache-${{ github.ref }}-${{ github.run_number }} | |
| # Restoring: From current branch, otherwise from base branch, otherwise from any branch. | |
| restore-keys: | | |
| ${{ runner.os }}-${{ matrix.name }}-ccache-${{ github.ref }} | |
| ${{ runner.os }}-${{ matrix.name }}-ccache-${{ github.base_ref }} | |
| ${{ runner.os }}-${{ matrix.name }}-ccache- | |
| - name: Tool versions | |
| run: | | |
| env cmake --version | |
| env ${{ matrix.cxx }} --version | |
| - name: Configure tests | |
| env: | |
| CXX: ${{ matrix.cxx }} | |
| CC: ${{ matrix.cc }} | |
| run: | | |
| mkdir build | |
| cd build | |
| cmake ../${{ env.REPOSITORY_NAME }} -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} \ | |
| -DCMAKE_CXX_FLAGS="${{ matrix.cxx_flags }}" | |
| make -j2 gtest_build | |
| - name: Build application | |
| env: | |
| CCACHE_BASEDIR: ${{ github.workspace }} | |
| CCACHE_DIR: ${{ github.workspace }}/.ccache | |
| CCACHE_COMPRESS: true | |
| CCACHE_COMPRESSLEVEL: 12 | |
| CCACHE_MAXSIZE: 75M | |
| run: | | |
| ccache -z | |
| cd build | |
| make -k -j2 | |
| ccache -sv | |
| - name: Build tests | |
| env: | |
| CCACHE_BASEDIR: ${{ github.workspace }} | |
| CCACHE_DIR: ${{ github.workspace }}/.ccache | |
| CCACHE_COMPRESS: true | |
| CCACHE_COMPRESSLEVEL: 12 | |
| CCACHE_MAXSIZE: 75M | |
| run: | | |
| ccache -z | |
| cd build | |
| make -k -j2 api_test cli_test | |
| ccache -sv | |
| - name: Run tests | |
| run: | | |
| cd build | |
| ctest . -j2 --output-on-failure | |