Skip to content

Commit

Permalink
Add GH actions workflow to test on Cubed
Browse files Browse the repository at this point in the history
  • Loading branch information
tomwhite committed Sep 10, 2024
1 parent 2b0333d commit 9764d6c
Showing 1 changed file with 33 additions and 0 deletions.
33 changes: 33 additions & 0 deletions .github/workflows/cubed.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,33 @@
name: Cubed

on:
push:
pull_request:
# manual trigger
workflow_dispatch:

jobs:
build:
# This workflow only runs on the origin org
# if: github.repository_owner == 'sgkit-dev'
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ["3.11"]

steps:
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}

- name: Install deps and sgkit
run: |
python -m pip install --upgrade pip
python -m pip install -r requirements.txt -r requirements-dev.txt
python -m pip install -U git+https://github.com/cubed-dev/cubed.git -U git+https://github.com/cubed-dev/cubed-xarray.git -U git+https://github.com/pydata/xarray.git
- name: Test with pytest
run: |
pytest -v sgkit/tests/test_aggregation.py -k "test_count_call_alleles" --use-cubed

0 comments on commit 9764d6c

Please sign in to comment.