Seongminchanges #6
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* add CN data class with plot function for selected cohorts and genes * add CN data class with plot function for selected cohorts and genes * fix plot title n count * add per-chromosome plot function to main class * add readme * fix readme to remove * fix readme * fix signature enumeration bug * add results * fix script name for import purposes, fix p-arm patching bug * fix readme to cope for import changes * fix results after p-arm color fix * allow SPECTRUM-DLP input * add SPECTRUM-DLP plots * fix typo for beartype * add SPECTRUM-DLP to readme * add SPECTRUM-DLP to readme * add CN peak/trough detection * add loading/saving files functionality * fix cn_utils to add peak detection * run with SPECTRUM and Metacohort * add cn and sv plotting functions * fix sv plotting for generalizatino * add vcf and consensus csv parsing functionality * add ideogram * add ideogram and cn plots * fix semantic error for nonexisting genome version * fix cytobands fn return error * fix cytobands dataframe bug * add examples * add read_table dtype * fix gitignore * fix example * fix debug lines * fix example * run after adding NOTCH3 * add gene plotting * fix gene plot bugs * fix function help
* add CN data class with plot function for selected cohorts and genes * add CN data class with plot function for selected cohorts and genes * fix plot title n count * add per-chromosome plot function to main class * add readme * fix readme to remove * fix readme * fix signature enumeration bug * add results * fix script name for import purposes, fix p-arm patching bug * fix readme to cope for import changes * fix results after p-arm color fix * allow SPECTRUM-DLP input * add SPECTRUM-DLP plots * fix typo for beartype * add SPECTRUM-DLP to readme * add SPECTRUM-DLP to readme * add CN peak/trough detection * add loading/saving files functionality * fix cn_utils to add peak detection * run with SPECTRUM and Metacohort * add cn and sv plotting functions * fix sv plotting for generalizatino * add vcf and consensus csv parsing functionality * add ideogram * add ideogram and cn plots * fix semantic error for nonexisting genome version * fix cytobands fn return error * fix cytobands dataframe bug * add examples * add read_table dtype * fix gitignore * fix example * fix debug lines * fix example * run after adding NOTCH3 * add gene plotting * fix gene plot bugs * fix function help * fix cohort and signatures so DLBCL analysis is possible * add genome version for cn_utils
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