Reliable analysis of clinical tumor-only whole exome sequencing data, Oh, S., Geistlinger, L., Ramos, M., Morgan, M., Waldron, L., Riester, M., JCO Clin Cancer Inform. 2020 Apr;4:321-335. doi: 10.1200/CCI.19.00130 link
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CNV analysis workflow code for the manuscript
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