GitHub - silencej/pollenTubeProc: Pollen Tube Image Processing Tools.

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 160 Commits
BaiSkeletonPruningDCE		BaiSkeletonPruningDCE
myLee		myLee
randFor		randFor
segPollen		segPollen
simuPollens		simuPollens
slicFeat		slicFeat
smooth_contours		smooth_contours
.gitignore		.gitignore
200G.pbm		200G.pbm
LICENSE		LICENSE
alignRtMatrix.m		alignRtMatrix.m
biplotWcf.m		biplotWcf.m
branMorphProc.m		branMorphProc.m
dataAnl.m		dataAnl.m
decomposeSkel.m		decomposeSkel.m
euDist.m		euDist.m
fastFloyd.m		fastFloyd.m
findEndPoint.m		findEndPoint.m
findInnerVers.m		findInnerVers.m
genFilelist.m		genFilelist.m
getBackbone.m		getBackbone.m
getCutFrame.m		getCutFrame.m
getDistMat.m		getDistMat.m
getEuLen.m		getEuLen.m
getFilelist.m		getFilelist.m
getFilesInDir.m		getFilesInDir.m
getGrayImg.m		getGrayImg.m
getImgFileNames.m		getImgFileNames.m
getLenFromBig.m		getLenFromBig.m
getLenOnLine.m		getLenOnLine.m
getLongestPath.m		getLongestPath.m
getPart.m		getPart.m
getRtMatrix.m		getRtMatrix.m
getVersion.m		getVersion.m
imbalanceTest.m		imbalanceTest.m
keepLargest.m		keepLargest.m
makeDfm.m		makeDfm.m
makeDrm.m		makeDrm.m
makeSimuData.m		makeSimuData.m
murphyFeat.m		murphyFeat.m
nbr8.m		nbr8.m
nearestPoc.m		nearestPoc.m
parsiSkel.m		parsiSkel.m
preProc.m		preProc.m
preproBig.m		preproBig.m
preprocSoma.m		preprocSoma.m
printFeat.m		printFeat.m
putBwlineOnRgb.m		putBwlineOnRgb.m
readme		readme
rtMatrixDist.m		rtMatrixDist.m
symUncer.m		symUncer.m
testDespekle.m		testDespekle.m
testSkel.m		testSkel.m
testWavy.m		testWavy.m
traceBranch.m		traceBranch.m
traceToEJ.m		traceToEJ.m
wavePick.m		wavePick.m

Repository files navigation

The main files are branMorphProc.m and preProc.m.

PreProc.m is used to preprocess the image. BranMorphProc.m is used to analyze.

Contact [email protected] for any problems.

The codes in the directory is GPL licensed, but the 3rd party codes such as Bai's codes, SLIC, MyLee, .etc are licensed on their own.

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About Manual Correction:

The manual correction can accomplish either adding or erasing task. You only need to select a region and the program will determine the operation depending on how much the region you specified are located.

And more, you only need to specify a smaller region than you want to add, and the program will automatically expand the region according to its similarity with surroundings.

In detail, if the region specified mostly located in the previous chosen zone (the region embraced by the white line), the program will take the erasing operation, otherwise the adding. It's well suited with human perception since if you want to erase, you will specify a region mostly overlapping the chosen zone.

There are some points you should note:

1. When adding, the region you specify should always overlap with previous chosen region. Otherwise, you new added region will be isolated with the chosen zone and discarded afterwards.

2. You don't need to specify a region carefully. But make sure that
a. The region you specify is always smaller than the region you want to add,
b. And the region is always larger than the region you want to erase.
The program will automatically expand or shrink your specified region respectively afterwards.