Experimental support for multichain capping #59

	name: pytest

	on: [push]

	defaults:
	run:
	# conda setup requires this special shell
	shell: bash -l {0}

	jobs:
	build-linux:
	runs-on: ubuntu-latest
	strategy:
	max-parallel: 5

	steps:
	- uses: actions/checkout@v3
	- uses: conda-incubator/setup-miniconda@v2
	with:
	python-version: 3.9
	environment-file: devtools/conda-envs/test_env.yaml
	channels: conda-forge,defaults
	activate-environment: test
	auto-update-conda: true
	auto-activate-base: false
	show-channel-urls: true
	- name: Install license
	shell: bash
	env:
	LICENSE_KEY: ${{ secrets.MODELLER_LICENSE_KEY }}
	run: \|
	sed -i -e "s/XXXX/${LICENSE_KEY}/g" /usr/share/miniconda/envs/test/lib/modeller-*/modlib/modeller/config.py

	- name: Install PyMEMENTO
	run: \|
	pip install .
	- name: Test with pytest
	run: \|
	pytest -v --cov=PyMEMENTO --cov-report=xml --color=yes PyMEMENTO/tests/ --runslow

	- name: CodeCov
	uses: codecov/codecov-action@v1
	with:
	file: ./coverage.xml
	flags: unittests
	name: codecov-PyMEMENTO

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