This directory contains the graphical user interface for the toolkit on Region of Interest based Functional Connectivity Analysis. The main window looks like this.
For more information about the fields in the main window, please look into this file.
- Made in Qt Creator
- Option for Registration of the data is also available if already not registered to the reference image. It used FLIRT for the registration.
- FSL is must for the working of the GUI.
- Accepts the groups upto 5 for now. The statistical analysis for ROI correlation maps has been implemented only for the various combinations of comparison between groups.
- An ROI atlas needs to be supplied where each voxel is labeled from 1 to N where N is total number of ROIs. The voxels outside the brain should be numbered 0.
- Statistical analysis within a group is also allowed. It is assumed that the mean correlation for the population is 0 as the Null Hypothesis.
- FDR Correction has also been implemented. If you want, you can also check Fisher Transformation for further normalization of the data.
- The statistical tests currently available are:
- Simple 1 sample Student’s t-test
- 2 sample t-test
A user can also preprocess the data if he wants. All the preprocessing methods have been explained in detail here.
In order to read more about it, please see this file.
This window allows for making changes in the statistical analysis. Please see the following file.