Initial work toward PyTorch data loaders #12
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| name: python-tiledbsoma-ml past tiledbsoma compat # Latest tiledbsoma version covered by another workflow | |
| on: | |
| pull_request: | |
| branches: ["*"] | |
| paths-ignore: | |
| - "scripts/**" | |
| - "notebooks/**" | |
| push: | |
| branches: [main] | |
| paths-ignore: | |
| - "scripts/**" | |
| - "notebooks/**" | |
| jobs: | |
| unit_tests: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] # could add 'macos-latest', but the matrix is already huge... | |
| python-version: ["3.9", "3.10", "3.11"] # TODO: add 3.12 when tiledbsoma releases wheels for it. | |
| pkg-version: | |
| - "tiledbsoma~=1.9.0 'numpy<2.0.0'" | |
| - "tiledbsoma~=1.10.0 'numpy<2.0.0'" | |
| - "tiledbsoma~=1.11.0" | |
| - "tiledbsoma~=1.12.0" | |
| - "tiledbsoma~=1.13.0" | |
| - "tiledbsoma~=1.14.0" | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: pip | |
| - name: Install prereqs | |
| run: | | |
| pip install --upgrade pip pytest setuptools | |
| pip install ${{ matrix.pkg-version }} . | |
| - name: Run tests | |
| run: pytest -v tests |