Merge pull request #1372 from jdb78/fix/dependencies #1483
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Test | |
| on: | |
| push: | |
| branches: [master] | |
| pull_request: | |
| branches: [master] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macOS-latest] # add windows-2019 when poetry allows installation with `-f` flag | |
| python-version: ["3.8", "3.9", "3.10"] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Setup macOS | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew install libomp # https://github.com/pytorch/pytorch/issues/20030 | |
| - name: Setup macOS | |
| if: runner.os == 'windows' | |
| run: | | |
| brew install libomp # https://github.com/pytorch/pytorch/issues/20030 | |
| - name: Get full Python version | |
| id: full-python-version | |
| shell: bash | |
| run: echo ::set-output name=version::$(python -c "import sys; print('-'.join(str(v) for v in sys.version_info))") | |
| - name: Install poetry | |
| shell: bash | |
| run: | | |
| curl -sSL https://install.python-poetry.org | python3 - | |
| - name: Set poetry path variable | |
| run: echo "/Users/runner/.local/bin" >> $GITHUB_PATH | |
| - name: Configure poetry | |
| shell: bash | |
| run: poetry config virtualenvs.in-project true | |
| - name: Set up cache | |
| uses: actions/cache@v2 | |
| id: cache | |
| with: | |
| path: .venv | |
| key: venv-${{ runner.os }}-${{ steps.full-python-version.outputs.version }}-${{ hashFiles('**/poetry.lock') }} | |
| - name: Ensure cache is healthy | |
| if: steps.cache.outputs.cache-hit == 'true' | |
| shell: bash | |
| run: poetry run pip --version >/dev/null 2>&1 || rm -rf .venv | |
| - name: Upgrade pip | |
| shell: bash | |
| run: poetry run python -m pip install pip -U | |
| - name: Install dependencies | |
| shell: bash | |
| run: poetry install -E "github-actions graph mqf2" | |
| # - name: Install pytorch geometric dependencies | |
| # shell: bash | |
| # run: poetry run pip install pyg_lib torch-scatter torch-sparse torch-cluster torch-spline-conv torch-geometric -f https://data.pyg.org/whl/torch-2.0.0+cpu.html | |
| - name: Run pytest | |
| shell: bash | |
| run: poetry run pytest tests | |
| - name: Statistics | |
| if: success() | |
| run: | | |
| pip install coverage | |
| coverage report | |
| coverage xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v1 | |
| if: always() | |
| continue-on-error: true | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: coverage.xml | |
| flags: cpu,pytest | |
| name: CPU-coverage | |
| fail_ci_if_error: false | |
| docs: | |
| name: Test docs build | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out Git repository | |
| uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.8 | |
| - name: Cache pip | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('docs/requirements.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update && sudo apt-get install -y pandoc | |
| python -m pip install --upgrade pip | |
| pip install -r docs/requirements.txt | |
| shell: bash | |
| - name: Build sphinx documentation | |
| run: | | |
| cd docs | |
| make clean | |
| make html --debug --jobs 2 SPHINXOPTS="-W" | |
| - name: Upload built docs | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: docs-results-${{ runner.os }}-${{ matrix.python-version }}-${{ matrix.requires }} | |
| path: docs/build/html/ | |
| # Use always() to always run this step to publish test results when there are test failures | |
| if: success() |