fix: hand symptoms to cTAKES in a format it expects #292
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mikix
commented
Jan 4, 2024
| "oracledb < 2", | ||
| "oracledb < 3", |
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Unrelated - just noticed that they released a new major version, dropping support for python 3.6
dogversioning
approved these changes
Jan 4, 2024
Ever since the March 17th, 2023 commit that fed cTAKES a custom bsv file, our COVID NLP performance has taken a hit (unbeknownst to us). cTAKES actually expects a slightly different format for symptoms bsv files, which we now enforce as we send it files. This gets our COVID NLP performance on a standard BCH set of 200-odd Cerner html notes from 0.784 to 0.813 F1. This commit bumps the covid tasks' task_format from 3 to 4.
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Ever since the March 17th, 2023 commit that fed cTAKES a custom bsv file, our COVID NLP performance has taken a hit (unbeknownst to us).
cTAKES actually expects a slightly different format for symptoms bsv files, which we now enforce as we send it files.
This gets our COVID NLP performance on a standard BCH set of 200-odd Cerner html notes from 0.784 to 0.813 F1.
This commit bumps the covid tasks' task_format from 3 to 4.
Checklist
docs/) needs to be updated