fixed cython interface #61
Workflow file for this run
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| name: Build and unit tests | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the main branch | |
| # Remove push when finally merging. | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| # Allows you to run this workflow manually from the Actions tab. | |
| workflow_dispatch: | |
| jobs: | |
| # This job is called test_docs. | |
| unit_test_and_docs: | |
| # Run on Ubuntu | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| name: TMR Build/Test | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it. | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.8 | |
| - name: Install and run unit tests | |
| run: | | |
| echo "============================================================="; | |
| echo "Run #${GITHUB_RUN_NUMBER}"; | |
| echo "Run ID: ${GITHUB_RUN_ID}"; | |
| echo "Testing: ${GITHUB_REPOSITORY}"; | |
| echo "Triggered by: ${GITHUB_EVENT_NAME}"; | |
| echo "Initiated by: ${GITHUB_ACTOR}"; | |
| echo "============================================================="; | |
| echo "============================================================="; | |
| echo "Create conda environment"; | |
| echo "============================================================="; | |
| source $CONDA/etc/profile.d/conda.sh; | |
| echo $CONDA/bin >> $GITHUB_PATH; | |
| conda create -n TMR python=3.8 numpy scipy -q -y; | |
| conda activate TMR; | |
| echo "============================================================="; | |
| echo "Installing dependencies"; | |
| echo "============================================================="; | |
| # Set directory variables | |
| export TMR_DIR=${GITHUB_WORKSPACE}; | |
| # zlib 1.2.12 apparently breaks this install, so we pin an older version | |
| conda install zlib=1.2.11; | |
| conda install -c anaconda openmpi -q -y; | |
| conda install gxx_linux-64=9.3.0 -q -y; | |
| conda install -c anaconda openblas -q -y; | |
| conda install -c conda-forge lapack -q -y; | |
| conda install -c conda-forge metis -q -y; | |
| # Install packages via pip | |
| pip install testflo; | |
| pip install cython; | |
| # Install libraries via apt-get | |
| sudo apt-get install libglu1-mesa | |
| # Install Blossom V | |
| cd $TMR_DIR/extern; | |
| wget https://pub.ist.ac.at/~vnk/software/blossom5-v2.05.src.tar.gz; | |
| tar -zxf blossom5-v2.05.src.tar.gz; | |
| cd blossom5-v2.05.src; | |
| cp ../Makefile-blossom5 Makefile; | |
| make; | |
| make lib; | |
| # Install OpenCASCADE | |
| cd $TMR_DIR/extern; | |
| wget https://acdl.mit.edu/ESP/otherOCCs/OCC681lin64.tgz; | |
| tar -zxf OCC681lin64.tgz; | |
| mv OpenCASCADE-6.8.1/ OpenCASCADE; | |
| export CASROOT=$TMR_DIR/extern/OpenCASCADE; | |
| export CASARCH=; | |
| export PATH=$CASROOT/bin:$PATH; | |
| export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$CASROOT/lib; | |
| # Install egads4py | |
| cd $TMR_DIR/extern; | |
| git clone https://github.com/smdogroup/egads4py.git; | |
| cd egads4py; | |
| rm -rf tests; | |
| rm -rf examples; | |
| cp Makefile.in.info Makefile.in; | |
| make EGADS_DIR=$TMR_DIR/extern/egads4py OPENCASCADE_INCLUDE=-I$CASROOT/$CASARCH/inc; | |
| make interface; | |
| export PYTHONPATH=${PYTHONPATH}:${TMR_DIR}/extern/egads4py; | |
| # Install tacs | |
| cd $TMR_DIR/extern; | |
| git clone https://github.com/smdogroup/tacs.git; | |
| cd tacs; | |
| rm -rf tests; | |
| rm -rf examples; | |
| cp Makefile.in.info Makefile.in; | |
| make OPENCASCADE_INCLUDE=-I$CASROOT/$CASARCH/inc TACS_DIR=$TMR_DIR/extern/tacs METIS_INCLUDE=-I${CONDA_PREFIX}/include/ METIS_LIB="-L${CONDA_PREFIX}/lib/ -lmetis"; | |
| make interface TACS_DIR=$TMR_DIR/extern/tacs METIS_INCLUDE=-I${CONDA_PREFIX}/include/ METIS_LIB="-L${CONDA_PREFIX}/lib/ -lmetis"; | |
| export PYTHONPATH=${PYTHONPATH}:${TMR_DIR}/extern/tacs; | |
| # Install paropt | |
| cd $TMR_DIR/extern; | |
| git clone https://github.com/smdogroup/paropt.git; | |
| cd paropt; | |
| rm -rf tests; | |
| rm -rf examples; | |
| cp Makefile.in.info Makefile.in; | |
| make PAROPT_DIR=$TMR_DIR/extern/paropt METIS_INCLUDE=-I${CONDA_PREFIX}/include/ METIS_LIB="-L${CONDA_PREFIX}/lib/ -lmetis"; | |
| make interface PAROPT_DIR=$TMR_DIR/extern/paropt; | |
| export PYTHONPATH=${PYTHONPATH}:${TMR_DIR}/extern/paropt; | |
| # Copy over and modify Makefile.in | |
| cd $TMR_DIR; | |
| head -n -4 Makefile.in.info > Makefile.in; | |
| sed -i 's/TMR_DEBUG_FLAGS = -fPIC -g/TMR_DEBUG_FLAGS = -fPIC -g -DTMR_HAS_OPENCASCADE -DTMR_HAS_EGADS/g' Makefile.in; | |
| sed -i 's/TMR_FLAGS = -fPIC -O3/TMR_FLAGS = -fPIC -O3 -DTMR_HAS_OPENCASCADE -DTMR_HAS_EGADS/g' Makefile.in; | |
| # Compile TMR | |
| echo "============================================================="; | |
| echo "Installing TMR"; | |
| echo "============================================================="; | |
| cd $TMR_DIR; | |
| make OPENCASCADE_INCLUDE=-I$CASROOT/$CASARCH/inc TMR_DIR=$TMR_DIR EGADS_DIR=$TMR_DIR/extern/egads4py TACS_DIR=$TMR_DIR/extern/tacs PAROPT_DIR=$TMR_DIR/extern/paropt METIS_INCLUDE=-I${CONDA_PREFIX}/include/ METIS_LIB="-L${CONDA_PREFIX}/lib/ -lmetis"; | |
| make interface OPENCASCADE_INCLUDE=-I$CASROOT/$CASARCH/inc TMR_DIR=$TMR_DIR EGADS_DIR=$TMR_DIR/extern/egads4py TACS_DIR=$TMR_DIR/extern/tacs PAROPT_DIR=$TMR_DIR/extern/paropt METIS_INCLUDE=-I${CONDA_PREFIX}/include/ METIS_LIB="-L${CONDA_PREFIX}/lib/ -lmetis"; | |
| echo "============================================================="; | |
| echo "running tests"; | |
| echo "============================================================="; | |
| rm -rf examples; | |
| testflo .; |