[INFRA] seqan3/std/* header files MUST NOT include any seqan3 header

…iguration.

Selects the correct simd scoring scheme based on the given matrix type. For the moment to test and implement the featurs of protein simd alignment
we can use this simple static differentiation.
Later this will be replaced by a dynamic dispatching mechanism.

Makes a test template for the alignment benchmark so we can reuse it for different benchmark settings.

When tracking the last cell of the banded column computation the matrix iterator was referring to the wrong alignment cell.

Before, the algorithm always tracked the last cell of the current column irrespective of its position within the global matrix.
This means, that the optimum could point to a cell that does not represent the full sequence and hence would not be a valid semi-gobal alignment.

…ble_banded_end_position

Optimise alignment/part6 enable banded end position

…microbenchmarks

Protein alignment/part1 add microbenchmarks

[DOC] Update cppreference index

[FIX] Timeout in debug nightlies

[FIX] Wrong ranks in search algorithm

pull changes from release-3.0.2 into master - progress of week 05

…eqan_compat/seqan2_char_alphabet

…bility overhead.

By applying this type erasure, we are actually generic to allow any user input as long as it fulfils the respective concepts
that are modeled explicitly for alphabets and scoring schemes.
It also is an initial step to reduce the boiler plate overloads in
seqan2 when we start adapting the algorithms step by step.