Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

'Error in EnrichrBarPlot(... : object 'dbs' not found' #337

Open
stephanieRedmond opened this issue Nov 26, 2024 · 0 comments
Open

'Error in EnrichrBarPlot(... : object 'dbs' not found' #337

stephanieRedmond opened this issue Nov 26, 2024 · 0 comments

Comments

@stephanieRedmond
Copy link

for(cur_db in dbs){

I get this error when running EnrichrBarPlot - and it does look like dbs is not passed via the function, nor defined from the saved enrichr results before calling it in the plotting function. I tried passing it in the function signature, but it didn't fix the issue.

EnrichrBarPlot(metacells_obj, outdir = file.path(output_plots, 'enrichr'), dbs = 'GO_Biological_Process_2021') and EnrichrBarPlot(metacells_obj, outdir = file.path(output_plots, 'enrichr')) result in: Error in EnrichrBarPlot(metacells_obj, outdir = file.path(output_plots, : object 'dbs' not found

Running EnrichrDotPlot resulted in no error since the database is a passed argument.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant