debigging

snakemake-workflows · Aug 7, 2023 · 5fb09a3 · 5fb09a3
1 parent 686934f
commit 5fb09a3
Showing 1 changed file with 8 additions and 8 deletions.
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -45,31 +45,31 @@ jobs:
     - uses: actions/checkout@v2
 
     - name: Test workflow (local FASTQs)
-      uses: snakemake/snakemake-github-action@v1
+      uses: snakemake/snakemake-github-action@fix/disk_space_on_error
       with:
         directory: .test
         snakefile: workflow/Snakefile
         args: "--configfile .test/config-simple/config.yaml --use-conda --show-failed-logs -j 10 --conda-cleanup-pkgs cache"
         show-disk-usage-on-error: true
 
     - name: Test testcase generation
-      uses: snakemake/snakemake-github-action@v1
+      uses: snakemake/snakemake-github-action@fix/disk_space_on_error
       with:
         directory: .test
         snakefile: workflow/Snakefile
         args: "results/testcases/a/freebayes/IX:314200 --configfile .test/config-simple/config.yaml --use-conda --show-failed-logs -j 10 --conda-cleanup-pkgs cache"
         show-disk-usage-on-error: true
 
     - name: Test report
-      uses: snakemake/snakemake-github-action@v1
+      uses: snakemake/snakemake-github-action@fix/disk_space_on_error
       with:
         directory: .test
         snakefile: workflow/Snakefile
         args: "--configfile .test/config-simple/config.yaml --report report.zip"
         show-disk-usage-on-error: true
 
     - name: Test workflow (local FASTQs, target regions)
-      uses: snakemake/snakemake-github-action@v1
+      uses: snakemake/snakemake-github-action@fix/disk_space_on_error
       with:
         directory: .test
         snakefile: workflow/Snakefile
@@ -79,7 +79,7 @@ jobs:
         show-disk-usage-on-error: true
 
     - name: Test workflow (local FASTQs, multiple target regions BED files)
-      uses: snakemake/snakemake-github-action@v1
+      uses: snakemake/snakemake-github-action@fix/disk_space_on_error
       with:
         directory: .test
         snakefile: workflow/Snakefile
@@ -89,7 +89,7 @@ jobs:
         show-disk-usage-on-error: true
 
     - name: Test workflow (local FASTQs, no candidate filtering)
-      uses: snakemake/snakemake-github-action@v1
+      uses: snakemake/snakemake-github-action@fix/disk_space_on_error
       with:
         directory: .test
         snakefile: workflow/Snakefile
@@ -99,7 +99,7 @@ jobs:
         show-disk-usage-on-error: true
 
     - name: Test workflow (local FASTQs primer)
-      uses: snakemake/snakemake-github-action@v1
+      uses: snakemake/snakemake-github-action@fix/disk_space_on_error
       with:
         directory: .test
         snakefile: workflow/Snakefile
@@ -109,7 +109,7 @@ jobs:
         show-disk-usage-on-error: true
 
     - name: Test workflow (SRA FASTQs)
-      uses: snakemake/snakemake-github-action@v1
+      uses: snakemake/snakemake-github-action@fix/disk_space_on_error
       with:
         directory: .test
         snakefile: workflow/Snakefile