fix base qual recal

snakemake-workflows · Aug 9, 2023 · af7174a · af7174a
1 parent e4dda87
commit af7174a
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/workflow/rules/mapping.smk b/workflow/rules/mapping.smk
@@ -136,6 +136,8 @@ rule recalibrate_base_qualities:
     params:
         extra=config["params"]["gatk"]["BaseRecalibrator"],
         java_opts="",
+    resources:
+        mem_mb=1024,
     log:
         "logs/gatk/baserecalibrator/{sample}.log",
     threads: 8