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fix: fix short observation plot #334

Merged
merged 1 commit into from
Oct 31, 2024
Merged

fix: fix short observation plot #334

merged 1 commit into from
Oct 31, 2024

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FelixMoelder
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@FelixMoelder FelixMoelder commented Oct 30, 2024

Short observation plots were not shown anymore due to a type error. Somehow this error occurred since updating to a newer datavzrd wrapper version.

Summary by CodeRabbit

  • New Features

    • Upgraded to Vega-Lite v5 schema, potentially unlocking new features for data visualization.
    • Enhanced tooltip configuration for clarity and accuracy in displaying data.
  • Bug Fixes

    • Corrected tooltip field type from "nominative" to "nominal" for better alignment with Vega-Lite terminology.

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coderabbitai bot commented Oct 30, 2024

Walkthrough

The changes involve an update to the JSON schema version in the spec_short_observations.json file from Vega-Lite v3 to v5. This update includes adjustments to the tooltip field type, changing it from "nominative" to "nominal," while the overall structure and logic of the schema remain unchanged. The encoding section continues to define the axes, order, and color fields, ensuring visual representation aligns with the specified categories.

Changes

File Path Change Summary
workflow/resources/datavzrd/spec_short_observations.json Updated schema version from v3 to v5; changed tooltip field type from "nominative" to "nominal".

Poem

In the garden of data, where schemas bloom bright,
Vega-Lite v5 brings a new kind of light.
With tooltips now tidy, and colors that sing,
Our charts dance with joy, oh what joy they bring!
From "nominative" to "nominal," a small change,
But in the world of visuals, it feels quite strange! 🐇✨


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Actionable comments posted: 0

🧹 Outside diff range and nitpick comments (1)
workflow/resources/datavzrd/spec_short_observations.json (1)

Line range hint 1-45: Overall visualization configuration is robust and well-structured.

The specification maintains a clear visual hierarchy with:

  • Appropriate bar chart representation
  • Well-defined color scale for evidence levels
  • Proper sorting and ordering of categories
  • Clear axis titles and tooltips

Consider documenting the color scale choices in a comment to help future maintainers understand the visual design decisions.

📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between 2076245 and 121a58c.

📒 Files selected for processing (1)
  • workflow/resources/datavzrd/spec_short_observations.json (2 hunks)
🔇 Additional comments (2)
workflow/resources/datavzrd/spec_short_observations.json (2)

32-43: Fixed tooltip type error correctly.

The change from "nominative" to "nominal" is correct and addresses the type error that was preventing short observation plots from displaying. The tooltip configuration is well-structured with appropriate titles and types.


2-2: Schema version update looks good, but verify compatibility.

The update to Vega-Lite v5 schema is appropriate and aligns with the newer datavzrd wrapper requirements.

Let's verify if the spec uses any deprecated or changed features:

✅ Verification successful

Schema version update is appropriate and safe

The update to Vega-Lite v5 schema is correct and the specification uses compatible features:

  • All field types used (nominal, ordinal, quantitative) are standard Vega-Lite types
  • The encoding structure follows v5 specifications
  • No deprecated or incompatible features are present in the file
🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Check for any other Vega-Lite specs that might need similar updates

# Search for other Vega-Lite schema declarations
rg -l "schema/vega-lite/v[0-9]" --type json

# Search for potentially incompatible features
rg '"type":\s*"nominative"' --type json

Length of output: 385


Script:

#!/bin/bash
# Let's try a different approach to find JSON files and Vega-Lite schemas

# First, find all JSON files
fd -e json

# Then specifically look at the content of spec_short_observations.json
cat workflow/resources/datavzrd/spec_short_observations.json

# Also check for any other files in datavzrd directory
fd . workflow/resources/datavzrd -e json

Length of output: 1769

@FelixMoelder
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I will merge this without review as it is a no brainer. :)

@FelixMoelder FelixMoelder merged commit 0d8dba7 into master Oct 31, 2024
8 checks passed
@FelixMoelder FelixMoelder deleted the fix/short_obs branch October 31, 2024 07:58
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