Update biomart.yaml

[iamh2o]

typos in env causing errors

Summary by CodeRabbit

• Chores
  • Updated formatting for dependency specifications in the configuration file for consistency.
  • Added a comment regarding a future update to the bioconductor-biomart dependency to address compatibility issues.

[coderabbitai]

Walkthrough

The changes involve modifications to the workflow/envs/biomart.yaml file, specifically in the dependencies section. The updates consist of removing spaces around the version specifications for the bioconductor-biomart and r-tidyverse dependencies, ensuring a consistent formatting style. The version constraints for both dependencies remain unchanged, and a comment indicates a planned future update to the bioconductor-biomart dependency to version 3.18 to address a compatibility issue.

Changes

File	Change Summary
workflow/envs/biomart.yaml	Removed spaces around version specifications for bioconductor-biomart and r-tidyverse; version constraints unchanged. Added comment for future update to bioconductor-biomart to version 3.18.

Sequence Diagram(s)

sequenceDiagram
    participant User
    participant Workflow
    participant Dependencies

    User->>Workflow: Request to update dependencies
    Workflow->>Dependencies: Check current versions
    Dependencies-->>Workflow: Return current versions
    Workflow->>Dependencies: Apply formatting changes
    Dependencies-->>Workflow: Confirm formatting applied
    Workflow->>User: Notify update complete

Loading

🐰 "In the YAML where rabbits play,
Dependencies dance in a tidy way.
No more spaces, neat and bright,
Version numbers now align just right!
A future update, we can see,
Compatibility, hopping with glee!" 🐇

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Configuration used: CodeRabbit UI
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📥 Commits

Files that changed from the base of the PR and between 993dcfc and 9b65758.

📒 Files selected for processing (1)

• workflow/envs/biomart.yaml (1 hunks)

✅ Files skipped from review due to trivial changes (1)

• workflow/envs/biomart.yaml

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[dlaehnemann]

Thanks for taking the time to clean these things up. Could you put all of the envs updates into a single pull request and make it follow the conventional commit messages (and PR names) mentioned in the lint:
https://github.com/snakemake-workflows/rna-seq-star-deseq2/actions/runs/11438171685/job/31819222708?pr=87

Also, what's the error you see. Documenting this here would be useful for others stumbling upon the same error.