Skip to content

Issues: snakemake/snakemake-wrappers

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

36 Open 96 Closed
36 Open 96 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

hisat2 align wrapper ht2l extension enhancement New feature or request
#3368 opened Oct 29, 2024 by gilless429
3
Autobump installing older versions bug Something isn't working
#3366 opened Oct 25, 2024 by fgvieira
Deactivate stale bot bug Something isn't working
#3284 opened Oct 1, 2024 by lczech
Custom meta-wrappers enhancement New feature or request
#3141 opened Aug 27, 2024 by t-silvers
ENSEMBL-SEQUENCE does not work for all species bug Something isn't working
#3070 opened Jul 12, 2024 by lczech
4
adding a cff file for citing the project enhancement New feature or request question Further information is requested
#2935 opened May 13, 2024 by cmeesters
NameError: name 'PosixPath' is not defined bug Something isn't working
#2793 opened Apr 6, 2024 by odetteg
1
the output files generated by using STAR in snakemake-wrappers should be more comprehensive. enhancement New feature or request Stale
#2756 opened Mar 19, 2024 by zhongzheng1999
6
STAR index wrapper with GFF enhancement New feature or request Stale
#2724 opened Mar 6, 2024 by andreott
2
Describe in the documentation of STAR wrapper how to use shared memory enhancement New feature or request
#2680 opened Feb 19, 2024 by moxgreen
2
Hisat2 align on large index bug Something isn't working
#2537 opened Jan 10, 2024 by andreott
7
change to earlier docs versions on readthedocs enhancement New feature or request
#2392 opened Dec 4, 2023 by nnneeennn
@johanneskoester
4
CI: autobump workflow never finishes
#1789 opened Sep 1, 2023 by fgvieira
2
Issue with TrimmomaticPE log reporting; incompatible with MultiQC bug Something isn't working
#961 opened Dec 6, 2022 by oligomyeggo
10
Error in snakemake wrapper goes not to log file bug Something isn't working
#885 opened Nov 17, 2022 by SilasK
@johanneskoester
13
security considerations for wrapper retrieval bug Something isn't working
#478 opened Apr 24, 2022 by FliesLikeABrick
@johanneskoester
2
vep download cache vs vep annotate bug Something isn't working
#365 opened May 24, 2021 by lczech
3
using ensemblgenomes for non-vertebrate references enhancement New feature or request
#341 opened Apr 17, 2021 by RvV1979
2
wrappers for hap.py and dipcall enhancement New feature or request
#294 opened Feb 27, 2021 by nate-d-olson
11
cutadapt pe bug Something isn't working
#291 opened Feb 9, 2021 by RoebideBruijn
1
gatk variantrecalibrator wrapper does not specify properly the resources path bug Something isn't working
#280 opened Jan 12, 2021 by alejocrojo09
1
Varscan/Snpeff wrappers are incompatible - please add warning to documentation bug Something isn't working
#275 opened Dec 3, 2020 by moldach
2
utility functions for general-purpose wrapper setup (e.g. JVM memory option handling) enhancement New feature or request
#235 opened Oct 20, 2020 by dlaehnemann
1
"stable" tag on readthedocs does not display the "Code" blocks bug Something isn't working
#223 opened Oct 14, 2020 by lparsons
1
Strelk2 bug: unsupported pickle protocol:3 bug Something isn't working
#192 opened Sep 24, 2020 by moldach
1
ProTip! Updated in the last three days: updated:>2024-10-28.