-
Notifications
You must be signed in to change notification settings - Fork 552
Issues: snakemake/snakemake
Announcement: Snakemake 8.0 released, including the removal o...
#2409
opened Aug 15, 2023 by
johanneskoester
Open
21
Announcement: Snakemake hackathon 2025 at CERN, call for part...
#3123
opened Oct 7, 2024 by
johanneskoester
Open
1
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Author
Label
Projects
Milestones
Assignee
Sort
Issues list
Clarify default behavior of snakemake without "--cores" option
enhancement
New feature or request
#3167
opened Oct 23, 2024 by
fhg-isi
More specific recommendations in Raise CreateCondaEnvironmentException: Conda must be version 24.7.1 or later,
enhancement
New feature or request
#3163
opened Oct 22, 2024 by
tito-abbo
Check for updated inputs while executing DAG
enhancement
New feature or request
#3161
opened Oct 21, 2024 by
WeatherGod
How to force Snakemake to run a rule only after all instances of a previous rule has finished
#3160
opened Oct 21, 2024 by
mgils4
Using snakemake -q all does not silence stdout and stderr from rules
bug
Something isn't working
#3152
opened Oct 17, 2024 by
peterjc
Callbacks from DAG .execute_workflow() needed for progress bar
enhancement
New feature or request
#3151
opened Oct 17, 2024 by
peterjc
Sequential execution in one script of parallely defined rules.
enhancement
New feature or request
#3143
opened Oct 15, 2024 by
gatoniel
--generate-unit-tests
will raise error in 8.20.1
or newer version
bug
#3137
opened Oct 13, 2024 by
jiangyun-fun
Question: Can you make an execute a snakemake workflow in pure python?
#3136
opened Oct 11, 2024 by
harrymatthews50
Running Snakemake --touch gives PulpSolverError
bug
Something isn't working
#3128
opened Oct 8, 2024 by
tbenavi1
Support standard Python virtual env. for rules
enhancement
New feature or request
#3124
opened Oct 7, 2024 by
ccoulombe
Announcement: Snakemake hackathon 2025 at CERN, call for participants!
enhancement
New feature or request
#3123
opened Oct 7, 2024 by
johanneskoester
Remove temporary paramiko version constraint
enhancement
New feature or request
#3120
opened Oct 7, 2024 by
coderabbitai
bot
Remove temporary paramiko version constraint
enhancement
New feature or request
#3119
opened Oct 7, 2024 by
coderabbitai
bot
snakemake --dag fails if there are ambiguities because workflow.execution_settings is None
bug
Something isn't working
#3118
opened Oct 7, 2024 by
tesujimath
mamba 2.0.0 doesn't support the Something isn't working
--no-default-packages
option
bug
#3108
opened Sep 30, 2024 by
edbennett
Be able to depend on individual dataset(s) within an HDF5 file
enhancement
New feature or request
#3106
opened Sep 26, 2024 by
edbennett
snakemake dependency 'datrie' requires fragile C extention compiles on modern python
bug
Something isn't working
#3105
opened Sep 25, 2024 by
samimia-swks
Enhance Report Plugin Flexibility: Template Language Support, File Rendering Options, and Report Structure Customization
enhancement
New feature or request
#3102
opened Sep 25, 2024 by
MatthiasLienhard
Restoring cached folders results in a clock skew error
bug
Something isn't working
#3097
opened Sep 20, 2024 by
karl-az
Rerun triggers not causing dependent steps to be rerun
bug
Something isn't working
#3095
opened Sep 19, 2024 by
powelleric
snakemake slurm seem to limit number of threads
bug
Something isn't working
#3092
opened Sep 19, 2024 by
benjamin-lieser
Conda + container fails to forward apptainer-args
bug
Something isn't working
#3088
opened Sep 17, 2024 by
karl-az
Snakemake output prints sensitive information with storage plugin
bug
Something isn't working
#3087
opened Sep 14, 2024 by
MattMonk
Previous Next
ProTip!
Exclude everything labeled
bug
with -label:bug.