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21 Open 230 Closed
21 Open 230 Closed
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Issues list

Error while parsing MaxNovo
#253 opened Nov 12, 2024 by JoergDoellinger
1
error when provided a single template with more than 12000 proteins A-phylogenetic-tree Area: Related to phylogenetic trees C-crash Category: A bad bug which leads to a crash, needs a fix ASAP!
#252 opened Nov 3, 2024 by irleader
1
pNovo local confidence invalid
#244 opened Dec 15, 2023 by Ln9052
3
Use proteases specificity M-needs-investigation Misc: Needs looking into by the assignee
#237 opened Jul 3, 2023 by douweschulte
Highlight common errors in consensus alignment A-html-report Area: Related to the HTML output report C-enhancement Category: New feature or request
#236 opened Jul 3, 2023 by douweschulte
Merge reads based on precursor mass C-enhancement Category: New feature or request M-possible-scoring-change Misc: Something that can affect the scoring M-unrefined-idea Things that are up in the air on the need of being implemented, as well as the exact implementation.
#235 opened Jul 3, 2023 by douweschulte
Force germline on low DOC A-alignment Area: Related to alignments C-enhancement Category: New feature or request M-possible-scoring-change Misc: Something that can affect the scoring M-unrefined-idea Things that are up in the air on the need of being implemented, as well as the exact implementation.
#234 opened Jul 3, 2023 by douweschulte
Rebuilding CDR3 is still very hard A-alignment Area: Related to alignments C-enhancement Category: New feature or request M-possible-scoring-change Misc: Something that can affect the scoring
#231 opened May 26, 2023 by douweschulte
2
Incorrect linking of Peaks ions tables C-bug Category: Bug, something isn't working
#228 opened Mar 9, 2023 by douweschulte
Score identities in CDRs higher C-enhancement Category: New feature or request M-possible-scoring-change Misc: Something that can affect the scoring M-unrefined-idea Things that are up in the air on the need of being implemented, as well as the exact implementation.
#226 opened Mar 1, 2023 by douweschulte
Github actions improvements A-github-actions Area: Related to github actions
#224 opened Feb 9, 2023 by douweschulte
2 tasks
Allow for termini based modifications A-ms Area: Low level MS related, eg looking in spectra. C-enhancement Category: New feature or request M-possible-scoring-change Misc: Something that can affect the scoring
#210 opened Dec 20, 2022 by douweschulte
Template Refine A-batchfile Area: Related to batchfiles used to set up runs C-enhancement Category: New feature or request M-possible-scoring-change Misc: Something that can affect the scoring
#208 opened Dec 6, 2022 by douweschulte
Sequence annotation is broken on gap in cdr A-html-report Area: Related to the HTML output report C-bug Category: Bug, something isn't working
#194 opened Oct 6, 2022 by douweschulte
2
Generate reduced set of templates A-templates-generation Area: Issues regarding the generation/cleaning of templates
#191 opened Oct 4, 2022 by douweschulte
Create a set of templates based on sequence fragments A-templates-generation Area: Issues regarding the generation/cleaning of templates
#190 opened Oct 4, 2022 by douweschulte
1
Xs in templates does not imply being partial A-templates-generation Area: Issues regarding the generation/cleaning of templates
#174 opened Jun 22, 2022 by douweschulte
Show non perfect matches sets of reads (templates reads tree) A-html-report Area: Related to the HTML output report M-unrefined-idea Things that are up in the air on the need of being implemented, as well as the exact implementation.
#152 opened Dec 23, 2021 by douweschulte
1
Tree branch node detail page A-html-report Area: Related to the HTML output report M-unrefined-idea Things that are up in the air on the need of being implemented, as well as the exact implementation.
#144 opened Dec 21, 2021 by douweschulte
1
PTM annotation in the final results A-html-report Area: Related to the HTML output report M-unrefined-idea Things that are up in the air on the need of being implemented, as well as the exact implementation.
#124 opened Dec 8, 2021 by douweschulte
2
Compare the results of runs M-wild-idea Misc: An idea that is really nice but maybe impossible
#95 opened Dec 8, 2021 by douweschulte
1
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