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Issues list

Run MMSeqs/FoldSeek with sequences that do not use amino acid sequences
#945 opened Jan 24, 2025 by danny305
3
Can I run mmseqs easy-cluster with gapped sequences?
#943 opened Jan 24, 2025 by JinyuanSun
1
createindex of target database bug
#942 opened Jan 24, 2025 by NotoriousTom
1
libmarv initialization error during GPU-accelerated search against ColabFold databases using Docker
#941 opened Jan 23, 2025 by brianloyal
12
mmseqs prefilter: performance issues on Mac ARM
#939 opened Jan 21, 2025 by jackroddy
msa2profile gets "killed" when processing eggNOGDB
#937 opened Jan 20, 2025 by eggrandio
Unable to download dbCAN2 database
#936 opened Jan 19, 2025 by mohitsharma-123
Help to troubleshoot a clustering-profile-search workflow
#935 opened Jan 18, 2025 by sivico26
Create Mmseqs MSA with species header against Uniprot similar to Jackhmmer output
#934 opened Jan 17, 2025 by abhinavb22
taxonomy module of mmseqs2 v16 accepts only --search-type 3
#932 opened Jan 17, 2025 by jasmezz
4
Unable to map all short peptides (7–30 aa) to reference proteome
#929 opened Jan 15, 2025 by PominovaMS
Mmseq does not cluster: Segmentation fault (core dumped)
#928 opened Jan 15, 2025 by loopersosa
linclust.sh: line 76: Segmentation fault
#927 opened Jan 15, 2025 by sinamajidian
3
Default threads number value should use sched_getaffinity
#925 opened Jan 6, 2025 by jbd
1
3
Exclude multiple taxonomy from a database
#924 opened Jan 3, 2025 by Xillanne
1
Segmentation fault with easy-cluster, low min-seq-id
#922 opened Dec 16, 2024 by pipparichter
2
Bus error while trying to cluster a nearly 800GB FASTA file using mmseqs easy-linclust
#921 opened Dec 16, 2024 by dezhi0730
2
max-seq-len default value
#920 opened Dec 12, 2024 by Dmitry-Antipov
Ungapped prefilter died during GPU-accelerated search
#919 opened Dec 11, 2024 by TheChosenOneJG
5
prefilter died
#918 opened Dec 11, 2024 by unknow1024
using Google Colab's GPU
#914 opened Dec 3, 2024 by Ryosuke-254
1
'FileNotFoundError: [Errno 2] No such file or directory
#913 opened Dec 3, 2024 by Ryosuke-254
2
Segmentation fault during linclust
#911 opened Dec 2, 2024 by scopello
6
a problem about the easy-search output format
#909 opened Nov 29, 2024 by 1nkcat
1
GPU supported databases
#908 opened Nov 27, 2024 by rukibuki
5
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