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Fix issue #772, Incorrect zeros included in emsd average when particles are dropped #139

Fix issue #772, Incorrect zeros included in emsd average when particles are dropped

Fix issue #772, Incorrect zeros included in emsd average when particles are dropped #139

Workflow file for this run

name: Pip
on: [push, pull_request, workflow_dispatch]
jobs:
TestLinux:
name: Python ${{ matrix.python }} ${{ matrix.display_name }}
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
include:
- python: "3.8"
display_name: "2019"
deps: "numpy==1.18.* scipy==1.4.* matplotlib==3.1.* pandas==1.0.* tables==3.6.* scikit-learn==0.22.* numba==0.47.* llvmlite==0.31.*"
- python: "3.9"
display_name: "2020"
deps: "numpy==1.19.* scipy==1.5.* matplotlib==3.3.* pandas==1.1.* tables==3.6.* scikit-learn==0.24.* numba==0.53.* llvmlite==0.36.*"
- python: "3.10"
display_name: "2021"
deps: "numpy==1.22.* scipy==1.7.* matplotlib==3.5.* pandas==1.3.* tables==3.7.* scikit-learn==1.0.* numba==0.55.* llvmlite==0.38.*"
- python: "3.11"
display_name: "2022"
deps: "numpy==1.24.* scipy==1.9.* matplotlib==3.6.* pandas==2.0.* tables==3.8.* scikit-learn==1.1.* numba==0.57.* llvmlite==0.40.*"
- python: "3.12"
display_name: "2023, no numba" # no numba support yet
deps: "numpy==1.26.* scipy==1.11.* matplotlib==3.8.* pandas==2.1.* tables==3.9.* scikit-learn==1.3.*"
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python }}
- name: Install HDF5 library
run: sudo apt-get install libhdf5-dev
- name: Install python dependencies
shell: bash
run: |
pip install --disable-pip-version-check --upgrade pip setuptools wheel
pip install -v -e .[test] ${{ matrix.deps }};
pip list
- name: Run tests
shell: bash
run: |
pytest trackpy