added toolbar links for #68

solgenomics · Mar 14, 2019 · 7cbef14 · 7cbef14
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diff --git a/mason/genomes/Citrus_clementina.mas b/mason/genomes/Citrus_clementina.mas
@@ -37,7 +37,9 @@ The genome assembly, pseudomolecules, annotations and genome browser are availab
     BLAST => '<a href="/tools/blast/?db_id=11">Genome, CDS and Proteins</a>',
     'Genome browser' => '<a href="/jbrowse_citrusgreening/current/?data=data/json/Citrus_clementina&tracks=DNA%2CGene%20models%20v1.0&highlight=">Jbrowse</a>',
     'Pathways' =>
-    '<a href="http://ptools.citrusgenomedb.org/organism-summary?object=CCLEMENTINA_ML" target="_blank">Metabolic pathway database</a>'
+    '<a href="http://ptools.citrusgenomedb.org/organism-summary?object=CCLEMENTINA_ML" target="_blank">Metabolic pathway database</a>',
+    'Gene curation' =>
+    '<a href="http://apollo.sgn.cornell.edu/apollo/1107961/jbrowse/index.html?loc=scaffold_1%3A11576231..17364358&tracks=DNA%2CAnnotations%2CGene%20models%20v1.0&highlight=" target="_blank">Apollo annotation editor</a>'
     )
     %>
 </&>

diff --git a/mason/site/toolbar/host.mas b/mason/site/toolbar/host.mas
@@ -9,6 +9,10 @@
         <li><a href="/tools/blast?db_id=11"><i>C clementina</i> databases</a></li>
         <li><a href="/tools/blast?db_id=5"><i>C sinensis</i> databases</a></li>
         <li role="separator" class="divider"></li>
+        <li class="dropdown-header">Annotation</li>
+        <li><a href="http://apollo.sgn.cornell.edu/apollo/1107961/jbrowse/index.html?loc=scaffold_1%3A11576231..17364358&tracks=DNA%2CAnnotations%2CGene%20models%20v1.0&highlight=" target="_blank"><i>C clementina</i> annotation editor</a></li>
+        <li><a href="http://apollo.sgn.cornell.edu/apollo/1121939/jbrowse/index.html?loc=chrUn%3A1..175194&tracks=DNA%2CAnnotations%2CGene%20models%20v2&highlight=" target="_blank"><i>C sinensis</i> annotation editor</a></li>
+        <li role="separator" class="divider"></li>
         <li class="dropdown-header">JBrowse</li>
         <li><a href="/jbrowse_citrusgreening/current/?data=data/json/Citrus_clementina&tracks=DNA%2CGene%20models%20v1.0&highlight="><i>C clementina</i> browser</a></li>
         <li><a href="/jbrowse_citrusgreening/current/?data=data/json/Citrus_sinensis&tracks=DNA%2CGene%20models%20v1.1&highlight="><i>C sinensis</i> browser</a></li>