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Add identifiers to all FamPlex entries #87

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Add identifiers to all FamPlex entries #87

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Commits on Jul 20, 2019

  1. Create .gitignore

    @cthoyt
    cthoyt authored Jul 20, 2019
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Commits on Jul 21, 2019

  1. Add descriptions file

    @cthoyt
    cthoyt committed Jul 21, 2019
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  2. Add upgrade script and rewrite exporters 

    - This adds identifiers and descriptions to all entities.
- For now, the old files will stay  until there's a good reason to commit to this new format.
- TODO: The check_references.py script needs to be rewritten still for the new format
    @cthoyt
    cthoyt committed Jul 21, 2019
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  3. Update check_references script 

    During this process I noticed I was writing the identifiers and names backwards. That's why we test!
    @cthoyt
    cthoyt committed Jul 21, 2019
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  4. Delete relations_graph.pdf

    @cthoyt
    cthoyt committed Jul 21, 2019
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  5. Update .gitignore

    @cthoyt
    cthoyt committed Jul 21, 2019
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  6. Delete __init__.py

    @cthoyt
    cthoyt committed Jul 21, 2019
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  7. Update hgnc_ids.py

    @cthoyt
    cthoyt committed Jul 21, 2019
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  8. Update .travis.yml

    @cthoyt
    cthoyt committed Jul 21, 2019
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  9. Update .travis.yml

    @cthoyt
    cthoyt committed Jul 21, 2019
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  10. Remove duplicates from original grounding map

    @cthoyt
    cthoyt committed Jul 21, 2019
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  11. Switch over to CSVs for everything

    @cthoyt
    cthoyt committed Jul 21, 2019
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  12. Fix filename and update README

    @cthoyt
    cthoyt committed Jul 21, 2019
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  13. Add check for text with multiple groundings to the same database

    @cthoyt
    cthoyt committed Jul 21, 2019
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  14. Update formatting of output 

    [skip ci]
    @cthoyt
    cthoyt committed Jul 21, 2019
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  15. Check for existence of cache files

    @cthoyt
    cthoyt committed Jul 21, 2019
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  16. Update hgnc_ids.py

    @cthoyt
    cthoyt committed Jul 21, 2019
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  17. Improve output

    @cthoyt
    cthoyt committed Jul 21, 2019
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  18. Refactor code for import 

    Still can't run interpro, reactome, or signor successfully
    @cthoyt
    cthoyt committed Jul 21, 2019
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