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@ctb ctb released this 05 Dec 22:07
· 24 commits to latest since this release
v4.8.12
0f48dc5
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Developer updates:

  • build: move ORCID to metadata in pyproject.toml, fix pixi (#3416)
  • build: simplify Rust release (#3392)
  • fix: Avoid re-calculating md5sum on clone and conversion to KmerMinHashBTree (#3385)
  • r0.15.1 release (#3304)
  • update sourmash core to r0.17.0 (#3381)
  • Added union method to HLL (#3293)
  • Build: upgrade to newer maturin (#3366)
  • CI: use supported ubuntu for codspeed (#3350)
  • Fix clippy lints from 1.83 beta (#3357)
  • Implement resumability for revindex (#3275)
  • add Manifest::intersect_manifest to Rust core (#3305)
  • bump sourmash core to r0.17.2 (#3399)
  • change sig_from_record to use scaled from Record to downsample (#3387)
  • derive Hash for HashFunctions (#3344)
  • enforce a single scaled on a CollectionSet (#3397)
  • fix formatting from #3306 (#3307)
  • have ruff ignore ipynb so as to avoid triggering an error during CI (#3325)
  • improve downsampling behavior on KmerMinHash; fix RevIndex::gather bug around scaled. (#3342)
  • panic when FSStorage::load_sig encounters more than one Signature in a JSON record (#3333)
  • propagate error from RocksDB::open on bad directory (#3306)
  • refactor calculate_gather_stats to disallow repeated downsampling (#3352)
  • release core r0.17.1 (#3388)
  • release sourmash rust core r0.16.0 (#3356)
  • standardize on u32 for scaled, and introduce ScaledType (#3364)
  • update plugin documentation for users (#3286)
  • update sourmash core to r0.15.2 (#3338)
  • when lingroups are provided, use them for csv_summary (#3311)
  • Misc Rust updates to core (#3297)
  • Resolve issue for high precision MLE estimation (#3296)

Dependabot and pre-commit CI updates:

  • Bump DeterminateSystems/magic-nix-cache-action from 7 to 8 (#3319)
  • Bump DeterminateSystems/nix-installer-action from 13 to 14 (#3320)
  • Bump DeterminateSystems/nix-installer-action from 14 to 15 (#3374)
  • Bump DeterminateSystems/nix-installer-action from 15 to 16 (#3401)
  • Bump camino from 1.1.7 to 1.1.9 (#3301)
  • Bump codspeed-criterion-compat from 2.6.0 to 2.7.2 (#3324)
  • Bump conda-incubator/setup-miniconda from 3.0.4 to 3.1.0 (#3373)
  • Bump csv from 1.3.0 to 1.3.1 (#3390)
  • Bump getset from 0.1.2 to 0.1.3 (#3328)
  • Bump histogram from 0.11.0 to 0.11.1 (#3377)
  • Bump js-sys from 0.3.72 to 0.3.74 (#3412)
  • Bump memmap2 from 0.9.4 to 0.9.5 (#3326)
  • Bump myst-parser from 3.0.1 to 4.0.0 (#3277)
  • Bump needletail from 0.5.1 to 0.6.0 (#3376)
  • Bump pypa/cibuildwheel from 2.19.2 to 2.20.0 (#3278)
  • Bump pypa/cibuildwheel from 2.20.0 to 2.21.1 (#3332)
  • Bump pypa/cibuildwheel from 2.21.1 to 2.21.2 (#3345)
  • Bump pypa/cibuildwheel from 2.21.2 to 2.21.3 (#3353)
  • Bump pypa/cibuildwheel from 2.21.3 to 2.22.0 (#3408)
  • Bump roaring from 0.10.6 to 0.10.7 (#3413)
  • Bump serde from 1.0.204 to 1.0.207 (#3289)
  • Bump serde from 1.0.207 to 1.0.208 (#3298)
  • Bump serde from 1.0.208 to 1.0.209 (#3310)
  • Bump serde from 1.0.209 to 1.0.210 (#3318)
  • Bump serde from 1.0.210 to 1.0.214 (#3368)
  • Bump serde from 1.0.214 to 1.0.215 (#3403)
  • Bump serde_json from 1.0.120 to 1.0.121 (#3267)
  • Bump serde_json from 1.0.121 to 1.0.122 (#3280)
  • Bump serde_json from 1.0.122 to 1.0.124 (#3288)
  • Bump serde_json from 1.0.124 to 1.0.125 (#3302)
  • Bump serde_json from 1.0.125 to 1.0.127 (#3309)
  • Bump serde_json from 1.0.127 to 1.0.128 (#3316)
  • Bump serde_json from 1.0.128 to 1.0.132 (#3358)
  • Bump serde_json from 1.0.132 to 1.0.133 (#3402)
  • Bump sphinx-design from 0.5.0 to 0.6.0 (#3268)
  • Bump sphinx-design from 0.6.0 to 0.6.1 (#3276)
  • Bump tempfile from 3.10.1 to 3.11.0 (#3279)
  • Bump tempfile from 3.11.0 to 3.12.0 (#3287)
  • Bump tempfile from 3.12.0 to 3.13.0 (#3340)
  • Bump tempfile from 3.13.0 to 3.14.0 (#3391)
  • Bump thiserror from 1.0.63 to 1.0.64 (#3335)
  • Bump thiserror from 1.0.64 to 1.0.65 (#3367)
  • Bump thiserror from 1.0.65 to 1.0.68 (#3379)
  • Bump thiserror from 1.0.68 to 2.0.3 (#3389)
  • Bump web-sys from 0.3.69 to 0.3.70 (#3299)
  • Bump web-sys from 0.3.70 to 0.3.72 (#3354)
  • Bump web-sys from 0.3.72 to 0.3.74 (#3411)
  • Update pytest-cov requirement from <6.0,>=4 to >=4,<7.0 (#3375)
  • Update sphinx requirement from <8,>=6 to >=6,<9 (#3269)
  • Upgrade rocksdb to 0.22.0, bump MSRV to 1.66 (#3383)
  • [pre-commit.ci] pre-commit autoupdate (#3281)
  • [pre-commit.ci] pre-commit autoupdate (#3290)
  • [pre-commit.ci] pre-commit autoupdate (#3312)
  • [pre-commit.ci] pre-commit autoupdate (#3330)
  • [pre-commit.ci] pre-commit autoupdate (#3336)
  • [pre-commit.ci] pre-commit autoupdate (#3341)
  • [pre-commit.ci] pre-commit autoupdate (#3346)
  • [pre-commit.ci] pre-commit autoupdate (#3360)
  • [pre-commit.ci] pre-commit autoupdate (#3369)
  • [pre-commit.ci] pre-commit autoupdate (#3380)
  • [pre-commit.ci] pre-commit autoupdate (#3393)
  • [pre-commit.ci] pre-commit autoupdate (#3404)
  • [pre-commit.ci] pre-commit autoupdate (#3409)
  • [pre-commit.ci] pre-commit autoupdate (#3414)
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