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@ctb ctb released this 11 Jun 01:05
· 162 commits to latest since this release
v4.8.9
55c0c45
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Learn about vigilant mode.

Minor new features:

  • add --set-name to sig intersect and sig subtract (#3162)
  • upgrade sig overlap and sig subtract to load more than JSON signatures (#3153)
  • force continue past tax genome classification errors (#3100)

Bug fixes:

  • fix remaining_bp output from sourmash gather (#3195)
  • fix RocksDB-based gather & other rust-based infelicities revealed by plugins (#3193, #3197)
  • use correct denominator in f_unique_to_query (#3138)

Cleanup and documentation updates:

  • update JOSS for sourmash v4 (#3114, #3203, #3209)
  • fix links to taxonomy spreadsheets (#3119)
  • fix description of f_unique_weighted (#3164)

Developer updates:

  • transition internal signature loading functions (#3161)
  • allow get/set record.filename (#3121)
  • round a number that is losing precision in 15th place in test_distance_utpy (#3126)
  • disable ppc64le wheel building (#3127)
  • prepare to remove sourmash compute for sourmash v5.0 (#3103)
  • add rustup target x86_64-apple-darwin (#3148)
  • mv .cargo/config to config.toml (#3147)
  • fix clippy warnings about max_value (#3146)
  • bump to v4.8.9-dev (#3135)
  • update src/core/CHANGELOG.md for sourmash-rs core release r0.14.0 (#3199)

Dependabot updates:

  • Bump DeterminateSystems/nix-installer-action from 11 to 12 (#3184)
  • Bump DeterminateSystems/magic-nix-cache-action from 6 to 7 (#3185)
  • Bump statrs from 0.16.0 to 0.16.1 (#3186)
  • Bump serde from 1.0.202 to 1.0.203 (#3175)
  • Bump ouroboros from 0.18.3 to 0.18.4 (#3176)
  • Bump itertools from 0.12.1 to 0.13.0 (#3166)
  • Bump camino from 1.1.6 to 1.1.7 (#3169)
  • Bump serde from 1.0.201 to 1.0.202 (#3168)
  • Bump thiserror from 1.0.60 to 1.0.61 (#3167)
  • Bump pypa/cibuildwheel from 2.18.0 to 2.18.1 (#3165)
  • Bump DeterminateSystems/magic-nix-cache-action from 4 to 6 (#3157)
  • Bump DeterminateSystems/nix-installer-action from 10 to 11 (#3156)
  • Bump pypa/cibuildwheel from 2.17.0 to 2.18.0 (#3155)
  • Bump serde_json from 1.0.116 to 1.0.117 (#3159)
  • Bump thiserror from 1.0.59 to 1.0.60 (#3158)
  • Bump serde from 1.0.200 to 1.0.201 (#3160)
  • Bump roaring from 0.10.3 to 0.10.4 (#3142)
  • Bump histogram from 0.10.0 to 0.10.1 (#3141)
  • Bump getrandom from 0.2.14 to 0.2.15 (#3143)
  • Bump num-iter from 0.1.44 to 0.1.45 (#3140)
  • Bump jinja2 from 3.1.3 to 3.1.4 (#3145)
  • Bump serde from 1.0.199 to 1.0.200 (#3144)
  • Bump serde from 1.0.198 to 1.0.199 (#3130)
  • Bump conda-incubator/setup-miniconda from 3.0.3 to 3.0.4 (#3131)
  • Update pytest requirement from <8.2.0,>=6.2.4 to >=6.2.4,<8.3.0 (#3132)
  • Bump myst-parser from 2.0.0 to 3.0.1 (#3133)
  • Bump thiserror from 1.0.58 to 1.0.59 (#3123)
  • Bump serde_json from 1.0.115 to 1.0.116 (#3124)
  • Bump serde from 1.0.197 to 1.0.198 (#3122)
  • Update docutils requirement from <0.21,>=0.17.1 to >=0.17.1,<0.22 (#3116)
Assets 8
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