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Brain tumor segmentation web service to predict the segmentation of 3D brain MRI images.

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soymintc/tumor-seg-web

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A web service to predict the brain tumor segmentations of 3D brain MRI images.
Below is a web page example of the prediction result.

Example prediction gif
Assumes that you run the scripts using python3 and that your tensorflow (v1.15) is supported by GPUs.

Install the necessary packages as follows:
pip3 install -r requirements.txt

Then create a seg_model directory, to store your segmentation model files.
mkdir segmodel

Put your model architecture saved as a json file into segmodel/segmodel_architecture.json and its weights saved as a hd5 file into segmodel/segmodel_weights.h5

Then start django webserver (in port 8000 as of now) as follows:
python manage.py runserver 0:8000

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Brain tumor segmentation web service to predict the segmentation of 3D brain MRI images.

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