We reviewed some existing training set optimization methods, and proposed some new ones for training set optimization in genomic selection to discover the most favorable genotypes from a candidate population.
The TSODBG can be installed from GitHub:
library(devtools)
install_github("spcspin/TSODBG", dependencies = TRUE, force = TRUE)TSODBG: Function for discover the best genotypes.
The test dataset provided in this package is the tropical rice dataset which was published by Spindel et al. (2015) <doi.org/10.1371/journal.pgen.1004982>.
- Szu-Ping Chen
- Author, maintainer
- E-mail: [email protected]
- Department of Agronomy, National Taiwan University, Taipei, Taiwan
- Wen-Hsiu Sung
- Author
- E-mail: [email protected]
- Department of Agronomy, National Taiwan University, Taipei, Taiwan
- Chen-Tuo Liao
- Author, thesis advisor
- E-mail: [email protected]
- Department of Agronomy, National Taiwan University, Taipei, Taiwan