(BITS-VIB)

Comparing NGS mappers

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Code developped for a white paper published on our Wiki.

Full information about the RNASeq hands-on training can be found on our BITS WIKI in the dedicated pages starting at Compare_Popular_Read_Mappers

The code posted here will be maintained and might be different from that cointained in the virtualbox image used during the training.

This repo presents two folders for

• scripts: code relative to the unix command-line manipulation of the reads (QC, mapping, post-processing, ...)
• R-scripts: the R/bioconductor analysis of the gene counts obtained from the mapping of the reads (EdgeR, Deseq2, RobiNA, ...)

Related work can be found in many places, please find here a starter

• Benchmark A comparison of different NGS read mappers

Please send comments and feedback to [email protected]

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This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 Unported License.