update with new citations

_data/citations.yaml

@@ -1,5 +1,73 @@
 # DO NOT EDIT, GENERATED AUTOMATICALLY
 
+- id: pmid:38465644
+  title: Tracing histoplasmosis genomic epidemiology and species occurrence across
+    the USA.
+  authors:
+  - "Bernardo Guerra Ten\xF3rio"
+  - Daniel R Kollath
+  - Lalitha Gade
+  - Anastasia P Litvintseva
+  - Tom Chiller
+  - Jeff S Jenness
+  - Jason E Stajich
+  - Daniel R Matute
+  - Andrew S Hanzlicek
+  - Bridget M Barker
+  - Marcus de Melo Teixeira
+  publisher: Emerging microbes & infections
+  date: '2024-03-11'
+  link: https://www.ncbi.nlm.nih.gov/pubmed/38465644
+  image: https://www.ncbi.nlm.nih.gov/pmc/articles/instance/10930103/bin/TEMI_A_2315960_F0001_OC.gif
+  tags:
+  - Histoplasma
+  plugin: sources.py
+  file: sources.yaml
+- id: pmid:38275281
+  title: Morphological and phylogenetic resolution of
+  authors:
+  - Brian Lovett
+  - Hana Barrett
+  - Angie M Macias
+  - Jason E Stajich
+  - Lindsay R Kasson
+  - Matt T Kasson
+  publisher: Mycologia
+  date: '2024-01-26'
+  link: https://www.ncbi.nlm.nih.gov/pubmed/38275281
+  image: https://www.tandfonline.com/action/showCoverImage?doi=10.1080/umyc20.v116.i02
+  tags:
+  - Conoideocrella
+  - biocontrol
+  - Clavicipitaceae
+  plugin: sources.py
+  file: sources.yaml
+- id: pmid:38490202
+  title: An endogenous DNA virus in an amphibian-killing fungus associated with pathogen
+    genotype and virulence.
+  authors:
+  - Rebecca A Clemons
+  - Mark N Yacoub
+  - Evelyn Faust
+  - L Felipe Toledo
+  - Thomas S Jenkinson
+  - Tamilie Carvalho
+  - D Rabern Simmons
+  - Erik Kalinka
+  - Lillian K Fritz-Laylin
+  - Timothy Y James
+  - Jason E Stajich
+  publisher: 'Current biology : CB'
+  date: '2024-03-08'
+  link: https://www.ncbi.nlm.nih.gov/pubmed/38490202
+  tags:
+  - Batrachochytrium
+  - Mycovirus
+  - Genome
+  - Frog
+  - Virulence
+  plugin: sources.py
+  file: sources.yaml
 - id: doi:10.1101/2024.01.24.576925
   title: Comparative genomics reveals intra and inter species variation in the pathogenic
     fungus<i>Batrachochytrium dendrobatidis</i>
@@ -9,12 +77,41 @@
   publisher: Cold Spring Harbor Laboratory
   date: '2024-01-25'
   link: https://doi.org/gthdcc
+  image: images/publication_images/Yacoub_2024.gif
   tags:
   - Batrachochytrium
-  - Compartive Genomics
+  - Comparative Genomics
   - pangenome
   plugin: sources.py
   file: sources.yaml
+- id: pmid:38349154
+  title: 'Herptile gut microbiomes: a natural system to study multi-kingdom interactions
+    between filamentous fungi and bacteria.'
+  authors:
+  - "Lluvia Vargas-Gast\xE9lum"
+  - Alexander S Romer
+  - Marjan Ghotbi
+  - Jason W Dallas
+  - N Reed Alexander
+  - Kylie C Moe
+  - Kerry L McPhail
+  - George F Neuhaus
+  - Leila Shadmani
+  - Joseph W Spatafora
+  - Jason E Stajich
+  - Javier F Tabima
+  - Donald M Walker
+  publisher: mSphere
+  date: '2024-02-13'
+  link: https://www.ncbi.nlm.nih.gov/pubmed/38349154
+  image: images/publication_images/Vargas_2024.jpg
+  tags:
+  - Herptile
+  - Microbiome
+  - Network
+  - Bacterial-Fungal Interactions
+  plugin: sources.py
+  file: sources.yaml
 - id: doi:10.1101/2024.01.20.575729
   title: Haplotype phased genome of 'Fairchild' mandarin highlights influence of local
     chromatin state on gene expression
@@ -208,27 +305,6 @@
   - gene prediction
   plugin: sources.py
   file: sources.yaml
-- id: doi:10.1101/2022.10.18.512709
-  title: 'Morphological and phylogenetic resolution of <i>Conoideocrella luteorostrata</i>
-    (Hypocreales: Clavicipitaceae), a potential biocontrol fungus for <i>Fiorinia
-    externa</i> in United States Christmas tree production areas'
-  authors:
-  - Brian Lovett
-  - Hana Barrett
-  - Angie M. Macias
-  - Jason E. Stajich
-  - Lindsay R. Kasson
-  - Matt T. Kasson
-  publisher: Microbiology
-  date: '2022-10-18'
-  link: https://doi.org/gstv3f
-  image: images/publication_images/conoideocrella_2023.jpg
-  tags:
-  - Conoideocrella
-  - biocontrol
-  - Clavicipitaceae
-  plugin: sources.py
-  file: sources.yaml
 - id: pmid:37740386
   title: The reference genome assembly of the bright cobblestone lichen, Acarospora
     socialis.
@@ -5186,7 +5262,7 @@
   link: https://www.ncbi.nlm.nih.gov/pubmed/21268975
   tags:
   - Batrachochytrium
-  - review
+  - Review
   plugin: sources.py
   file: sources.yaml
 - id: pmid:20885784

_data/sources.yaml

@@ -1,8 +1,33 @@
+- id: pmid:38465644
+  image: https://www.ncbi.nlm.nih.gov/pmc/articles/instance/10930103/bin/TEMI_A_2315960_F0001_OC.gif
+  tags:
+    - Histoplasma
+- id: pmid:38275281
+  image: https://www.tandfonline.com/action/showCoverImage?doi=10.1080/umyc20.v116.i02
+  tags: 
+    - Conoideocrella
+    - biocontrol
+    - Clavicipitaceae
+- id: pmid:38490202
+  tags:
+    - Batrachochytrium
+    - Mycovirus
+    - Genome
+    - Frog
+    - Virulence
 - id: doi:10.1101/2024.01.24.576925
+  image: images/publication_images/Yacoub_2024.gif
   tags:
     - Batrachochytrium
-    - Compartive Genomics
+    - Comparative Genomics
     - pangenome
+- id: pmid:38349154
+  image: images/publication_images/Vargas_2024.jpg
+  tags:
+    - Herptile
+    - Microbiome
+    - Network
+    - Bacterial-Fungal Interactions
 - id: doi:10.1101/2024.01.20.575729
   image: images/publication_images/Citrus_stack.jpg
   tags:
@@ -39,30 +64,24 @@
 - id: pmid:37988381
   image: https://journals.plos.org/plosbiology/article/figure/image?size=large&id=10.1371/journal.pbio.3002400.g002
   tags:
-   - nematode trapping fungi
-   - genomics
-   - transcriptome
-   - Arthrobotrys
+    - nematode trapping fungi
+    - genomics
+    - transcriptome
+    - Arthrobotrys
 - id: pmid:37800904
   image: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10597469/bin/msphere.00267-23.f001.jpg
   tags:
-   - sharpshooter
-   - microbiome
-   - insect
-   - host-microbe
+    - sharpshooter
+    - microbiome
+    - insect
+    - host-microbe
 - id: doi:10.3390/jof9111094
   image: https://www.mdpi.com/jof/jof-09-01094/article_deploy/html/images/jof-09-01094-g003-550.jpg
   tags:
     - coccidioides
     - onygenales
     - RNA-seq
     - gene prediction
-- id: doi:10.1101/2022.10.18.512709
-  image: images/publication_images/conoideocrella_2023.jpg
-  tags: 
-    - Conoideocrella
-    - biocontrol
-    - Clavicipitaceae
 - id: pmid:37740386
   image: images/publication_images/acarospora_fig1.jpg
   tags:
@@ -1318,7 +1337,7 @@
 - id: pmid:21268975
   tags:
     - Batrachochytrium
-    - review
+    - Review
 - id: pmid:20885784
   tags:
     - meiosis