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feat: Use Stan 2.34.1 #404

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merged 3 commits into from
Feb 7, 2024
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feat: Use Stan 2.34.1 #404

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8054bb8
fix: Replace deprecated numpy.product use
riddell-stan Feb 7, 2024
1d8c816
chore(docs): Update sphinx and theme requirements
riddell-stan Feb 7, 2024
0be246b
feat: Use Stan 2.34.1
riddell-stan Feb 7, 2024
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2 changes: 0 additions & 2 deletions .github/workflows/main.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -10,11 +10,9 @@ jobs:
strategy:
matrix:
include:
- {runs-on: ubuntu-20.04, python-version: "3.8"}
- {runs-on: ubuntu-20.04, python-version: "3.9"}
- {runs-on: ubuntu-22.04, python-version: "3.10"}
- {runs-on: ubuntu-22.04, python-version: "3.11"}
- {runs-on: macos-11, python-version: "3.8"}
- {runs-on: macos-11, python-version: "3.9"}
- {runs-on: macos-11, python-version: "3.10"}
- {runs-on: macos-11, python-version: "3.11"}
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4 changes: 2 additions & 2 deletions docs-requirements.txt
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@@ -1,5 +1,5 @@
# docs requirements
# these requirements are used by the documentation builder

sphinx~=4.2 # BSD
sphinx-rtd-theme~=1.0.0
sphinx~=7.2 # BSD
sphinx-rtd-theme~=2.0
10 changes: 5 additions & 5 deletions pyproject.toml
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@@ -1,6 +1,6 @@
[tool.poetry]
name = "pystan"
version = "3.8.0"
version = "3.9.0"
description = "Python interface to Stan, a package for Bayesian inference"
authors = [
"Allen Riddell <[email protected]>",
Expand All @@ -22,9 +22,9 @@ classifiers = [
]

[tool.poetry.dependencies]
python = "^3.8"
python = "^3.9"
aiohttp = "^3.6"
httpstan = "~4.11"
httpstan = "~4.12"
pysimdjson = "^5.0.2"
numpy = "^1.19"
clikit = "^0.6"
Expand All @@ -42,8 +42,8 @@ types-setuptools = "^57.4"
flake8 = "^4.0"
# documentation
# NOTE: when changing these, update docs-requirements.txt
sphinx = "^4.2"
sphinx-rtd-theme = "^1.0"
sphinx = "^7.2"
sphinx-rtd-theme = "^2.0"

[tool.black]
line-length = 119
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2 changes: 1 addition & 1 deletion stan/fit.py
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Expand Up @@ -52,7 +52,7 @@ def __init__(
# These names are gathered later in this function by inspecting the output from Stan.
self.sample_and_sampler_param_names: Tuple[str, ...]

num_flat_params = sum(np.product(dims_ or 1) for dims_ in dims) # if dims == [] then it is a scalar
num_flat_params = sum(np.prod(dims_ or 1) for dims_ in dims) # if dims == [] then it is a scalar
assert num_flat_params == len(constrained_param_names)
num_samples_saved = ceil(self.num_samples / self.num_thin) + ceil(
(self.num_warmup * self.save_warmup) / self.num_thin
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