Added 'noinit' runs to elbo plots for newsgroups data.

docs/assess_fits_newsgroups.html

@@ -433,15 +433,15 @@ <h4 class="author">Peter Carbonetto</h4>
 <div class="panel panel-default">
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-<a data-toggle="collapse" data-parent="#workflowr-checks" href="#strongRepositoryversionstrongahrefhttpsgithubcomstephenslabfastTopicsexperimentstree11b38d620f470f3a3996fd422268a3bb1523e948targetblank11b38d6a">
+<a data-toggle="collapse" data-parent="#workflowr-checks" href="#strongRepositoryversionstrongahrefhttpsgithubcomstephenslabfastTopicsexperimentstree99c9d44a6de2636aa4e077ed0e55f89619ccfdc2targetblank99c9d44a">
 <span class="glyphicon glyphicon-ok text-success"
 aria-hidden="true"></span> <strong>Repository version:</strong>
-<a href="https://github.com/stephenslab/fastTopics-experiments/tree/11b38d620f470f3a3996fd422268a3bb1523e948" target="_blank">11b38d6</a>
+<a href="https://github.com/stephenslab/fastTopics-experiments/tree/99c9d44a6de2636aa4e077ed0e55f89619ccfdc2" target="_blank">99c9d44</a>
 </a>
 </p>
 </div>
 <div
-id="strongRepositoryversionstrongahrefhttpsgithubcomstephenslabfastTopicsexperimentstree11b38d620f470f3a3996fd422268a3bb1523e948targetblank11b38d6a"
+id="strongRepositoryversionstrongahrefhttpsgithubcomstephenslabfastTopicsexperimentstree99c9d44a6de2636aa4e077ed0e55f89619ccfdc2targetblank99c9d44a"
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@@ -451,7 +451,7 @@ <h4 class="author">Peter Carbonetto</h4>
 </p>
 <p>
 The results in this page were generated with repository version
-<a href="https://github.com/stephenslab/fastTopics-experiments/tree/11b38d620f470f3a3996fd422268a3bb1523e948" target="_blank">11b38d6</a>.
+<a href="https://github.com/stephenslab/fastTopics-experiments/tree/99c9d44a6de2636aa4e077ed0e55f89619ccfdc2" target="_blank">99c9d44</a>.
 See the <em>Past versions</em> tab to see a history of the changes made
 to the R Markdown and HTML files.
 </p>
@@ -467,17 +467,18 @@ <h4 class="author">Peter Carbonetto</h4>
 <pre><code>
 Ignored files:
     Ignored:    analysis/.sos/
+    Ignored:    analysis/figure/
     Ignored:    data/20news-bydate/
     Ignored:    data/droplet.RData
     Ignored:    data/nips_1-17.mat
     Ignored:    data/pbmc_68k.RData
     Ignored:    output/newsgroups/de-newsgroups.RData
     Ignored:    output/newsgroups/fits-newsgroups.RData
     Ignored:    output/newsgroups/rds/
+    Ignored:    output/nips/fits-nips.RData
     Ignored:    output/pbmc68k/rds/
 
 Untracked files:
-    Untracked:  analysis/.DS_Store
     Untracked:  analysis/lda-eb-newsgroups-em-k=10.rds
     Untracked:  analysis/lda-eb-newsgroups-scd-ex-k=10.rds
     Untracked:  analysis/lda-newsgroups-em-k=10.rds
@@ -540,6 +541,40 @@ <h4 class="author">Peter Carbonetto</h4>
 Rmd
 </td>
 <td>
+<a href="https://github.com/stephenslab/fastTopics-experiments/blob/99c9d44a6de2636aa4e077ed0e55f89619ccfdc2/analysis/assess_fits_newsgroups.Rmd" target="_blank">99c9d44</a>
+</td>
+<td>
+Peter Carbonetto
+</td>
+<td>
+2024-08-21
+</td>
+<td>
+workflowr::wflow_publish("assess_fits_newsgroups.Rmd", verbose = TRUE)
+</td>
+</tr>
+<tr>
+<td>
+html
+</td>
+<td>
+<a href="https://rawcdn.githack.com/stephenslab/fastTopics-experiments/337b52c7ea2e5d87a6896d976721b2e66a8486e2/docs/assess_fits_newsgroups.html" target="_blank">337b52c</a>
+</td>
+<td>
+Peter Carbonetto
+</td>
+<td>
+2024-08-21
+</td>
+<td>
+Build site.
+</td>
+</tr>
+<tr>
+<td>
+Rmd
+</td>
+<td>
 <a href="https://github.com/stephenslab/fastTopics-experiments/blob/11b38d620f470f3a3996fd422268a3bb1523e948/analysis/assess_fits_newsgroups.Rmd" target="_blank">11b38d6</a>
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@@ -1612,6 +1647,17 @@ <h4 class="author">Peter Carbonetto</h4>
 <tbody>
 <tr>
 <td>
+<a href="https://github.com/stephenslab/fastTopics-experiments/blob/337b52c7ea2e5d87a6896d976721b2e66a8486e2/docs/figure/assess_fits_newsgroups.Rmd/words-scatterplot-1.png" target="_blank">337b52c</a>
+</td>
+<td>
+Peter Carbonetto
+</td>
+<td>
+2024-08-21
+</td>
+</tr>
+<tr>
+<td>
 <a href="https://github.com/stephenslab/fastTopics-experiments/blob/1f86ead8f9a0a9e73aeb57fd5a4cc9670f191a6b/docs/figure/assess_fits_newsgroups.Rmd/words-scatterplot-1.png" target="_blank">1f86ead</a>
 </td>
 <td>
@@ -1687,6 +1733,17 @@ <h4 class="author">Peter Carbonetto</h4>
 <tbody>
 <tr>
 <td>
+<a href="https://github.com/stephenslab/fastTopics-experiments/blob/337b52c7ea2e5d87a6896d976721b2e66a8486e2/docs/figure/assess_fits_newsgroups.Rmd/elbo-plots-1.png" target="_blank">337b52c</a>
+</td>
+<td>
+Peter Carbonetto
+</td>
+<td>
+2024-08-21
+</td>
+</tr>
+<tr>
+<td>
 <a href="https://github.com/stephenslab/fastTopics-experiments/blob/1f86ead8f9a0a9e73aeb57fd5a4cc9670f191a6b/docs/figure/assess_fits_newsgroups.Rmd/elbo-plots-1.png" target="_blank">1f86ead</a>
 </td>
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