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Add mr.mash-rss #4

Merged
merged 107 commits into from
May 6, 2024
Merged

Add mr.mash-rss #4

merged 107 commits into from
May 6, 2024

Commits on Mar 1, 2023

  1. Copy files for rss version

    @fmorgante
    fmorgante committed Mar 1, 2023
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Commits on Mar 3, 2023

  1. Rename file

    @fmorgante
    fmorgante committed Mar 3, 2023
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Commits on Mar 4, 2023

  1. Start modifying functions to use xtx and xtY

    @fmorgante
    fmorgante committed Mar 4, 2023
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Commits on Mar 6, 2023

  1. Keep modifying rss functions

    @fmorgante
    fmorgante committed Mar 6, 2023
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  2. Small change

    @fmorgante
    fmorgante committed Mar 6, 2023
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  3. More changes to rss functions

    @fmorgante
    fmorgante committed Mar 6, 2023
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  4. Bump up version

    @fmorgante
    fmorgante committed Mar 6, 2023
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  5. Fix inputs bug

    @fmorgante
    fmorgante committed Mar 6, 2023
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  6. Run devtools::document()

    @fmorgante
    fmorgante committed Mar 6, 2023
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  7. Bump up version and add author

    @fmorgante
    fmorgante committed Mar 6, 2023
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  8. Fix bug

    @fmorgante
    fmorgante committed Mar 6, 2023
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  9. Fiz issue with order of arguments

    @fmorgante
    fmorgante committed Mar 6, 2023
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  10. Remove junk code

    @fmorgante
    fmorgante committed Mar 6, 2023
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  11. Remove junk code 2

    @fmorgante
    fmorgante committed Mar 6, 2023
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  12. Fix naming issue

    @fmorgante
    fmorgante committed Mar 6, 2023
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  13. Fix bug

    @fmorgante
    fmorgante committed Mar 6, 2023
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Commits on Mar 7, 2023

  1. Fix bug

    @fmorgante
    fmorgante committed Mar 7, 2023
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  2. Fix another bug

    @fmorgante
    fmorgante committed Mar 7, 2023
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  3. Fix yet another bug

    @fmorgante
    fmorgante committed Mar 7, 2023
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  4. Try fixing a bug

    @fmorgante
    fmorgante committed Mar 7, 2023
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  5. Fix bug

    @fmorgante
    fmorgante committed Mar 7, 2023
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  6. Fix bug

    @fmorgante
    fmorgante committed Mar 7, 2023
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  7. Add YtY

    @fmorgante
    fmorgante committed Mar 7, 2023
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  8. Add YtY

    @fmorgante
    fmorgante committed Mar 7, 2023
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  9. Fix missing part

    @fmorgante
    fmorgante committed Mar 7, 2023
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  10. Bump up version

    @fmorgante
    fmorgante committed Mar 7, 2023
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Commits on Mar 8, 2023

  1. Add case of standardized X

    @fmorgante
    fmorgante committed Mar 8, 2023
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Commits on Mar 9, 2023

  1. Fix bug

    @fmorgante
    fmorgante committed Mar 9, 2023
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  2. Bump up version

    @fmorgante
    fmorgante committed Mar 9, 2023
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Commits on Mar 14, 2023

  1. Add code to perform the inner loop in Rcpp

    @fmorgante
    fmorgante committed Mar 14, 2023
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  2. Fix bugs -- ELBO still wrong

    @fmorgante
    fmorgante committed Mar 14, 2023
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  3. Run devtools::document()

    @fmorgante
    fmorgante committed Mar 14, 2023
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Commits on Mar 15, 2023

  1. Fix issue with ELBO rss computation

    @fmorgante
    fmorgante committed Mar 15, 2023
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  2. Simplify computation

    @fmorgante
    fmorgante committed Mar 15, 2023
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  3. Bump up version

    @fmorgante
    fmorgante committed Mar 15, 2023
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Commits on Mar 16, 2023

  1. Add utility function

    @fmorgante
    fmorgante committed Mar 16, 2023
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  2. Add input checks and deal with intercept

    @fmorgante
    fmorgante committed Mar 16, 2023
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  3. Add coeff and predict functions for the mr.mash.rss class

    @fmorgante
    fmorgante committed Mar 16, 2023
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  4. Add clarification

    @fmorgante
    fmorgante committed Mar 16, 2023
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  5. Add dependency and bump up version

    @fmorgante
    fmorgante committed Mar 16, 2023
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  6. Fix example

    @fmorgante
    fmorgante committed Mar 16, 2023
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  7. Fix names

    @fmorgante
    fmorgante committed Mar 16, 2023
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  8. Run devtools::document()

    @fmorgante
    fmorgante committed Mar 16, 2023
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  9. Bump up version

    @fmorgante
    fmorgante committed Mar 16, 2023
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  10. Fix issue

    @fmorgante
    fmorgante committed Mar 16, 2023
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Commits on Mar 17, 2023

  1. Fix bug

    @fmorgante
    fmorgante committed Mar 17, 2023
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Commits on Mar 21, 2023

  1. Add Deborah to license

    @fmorgante
    fmorgante committed Mar 21, 2023
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Commits on Mar 22, 2023

  1. Improve simulation function

    @fmorgante
    fmorgante committed Mar 22, 2023
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  2. Bump up version

    @fmorgante
    fmorgante committed Mar 22, 2023
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  3. Fix some conflicts 

    Merge remote-tracking branch 'refs/remotes/origin/rss_dev' into rss_dev
    @fmorgante
    fmorgante committed Mar 22, 2023
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  4. Add seed argument

    @fmorgante
    fmorgante committed Mar 22, 2023
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  5. Run devtools::document()

    @fmorgante
    fmorgante committed Mar 22, 2023
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  6. Additional improvements

    @fmorgante
    fmorgante committed Mar 22, 2023
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  7. Run devtools::document()

    @fmorgante
    fmorgante committed Mar 22, 2023
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  8. Fix bugs

    @fmorgante
    fmorgante committed Mar 22, 2023
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  9. Handle covariance matrices that are not PD

    @fmorgante
    fmorgante committed Mar 22, 2023
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  10. Run devtools::document()

    @fmorgante
    fmorgante committed Mar 22, 2023
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  11. Bump up version

    @fmorgante
    fmorgante committed Mar 22, 2023
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  12. Fix issues with rng

    @fmorgante
    fmorgante committed Mar 22, 2023
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  13. Add flag to deal with large matrices

    @fmorgante
    fmorgante committed Mar 22, 2023
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  14. Bump up version

    @fmorgante
    fmorgante committed Mar 22, 2023
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  15. Improve efficiency

    @fmorgante
    fmorgante committed Mar 22, 2023
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  16. Run devtools::document()

    @fmorgante
    fmorgante committed Mar 22, 2023
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  17. Bump up version

    @fmorgante
    fmorgante committed Mar 22, 2023
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Commits on Mar 25, 2023

  1. Add arma compilation flags

    @fmorgante
    fmorgante committed Mar 25, 2023
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  2. Bump up version

    @fmorgante
    fmorgante committed Mar 25, 2023
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  3. Add additional flags

    @fmorgante
    fmorgante committed Mar 25, 2023
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Commits on Mar 30, 2023

  1. Fix computations

    @fmorgante
    fmorgante committed Mar 30, 2023
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  2. Run devtools::document()

    @fmorgante
    fmorgante committed Mar 30, 2023
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  3. Bump up version

    @fmorgante
    fmorgante committed Mar 30, 2023
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  4. Add option for update order

    @fmorgante
    fmorgante committed Mar 30, 2023
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  5. Run devtools::document()

    @fmorgante
    fmorgante committed Mar 30, 2023
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  6. Bump up version

    @fmorgante
    fmorgante committed Mar 30, 2023
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  7. Add option for a random order of updates

    @fmorgante
    fmorgante committed Mar 30, 2023
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  8. Run devtools::document

    @fmorgante
    fmorgante committed Mar 30, 2023
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  9. Bump up version

    @fmorgante
    fmorgante committed Mar 30, 2023
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Commits on Mar 31, 2023

  1. Add some rss version unit tests

    @fmorgante
    fmorgante committed Mar 31, 2023
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  2. Bump up version

    @fmorgante
    fmorgante committed Mar 31, 2023
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  3. Update README and run pkgdown::build_site()

    @fmorgante
    fmorgante committed Mar 31, 2023
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Commits on Apr 17, 2023

  1. Fix bug

    @fmorgante
    fmorgante committed Apr 17, 2023
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  2. Bump up version

    @fmorgante
    fmorgante committed Apr 17, 2023
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Commits on Apr 27, 2023

  1. Fix example

    @fmorgante
    fmorgante committed Apr 27, 2023
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  2. Merge branch 'rss_dev' of github.com:morgantelab/mr.mash.alpha into r… 

    …ss_dev
    @fmorgante
    fmorgante committed Apr 27, 2023
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  3. Run devtools::document()

    @fmorgante
    fmorgante committed Apr 27, 2023
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  4. Bump up version

    @fmorgante
    fmorgante committed Apr 27, 2023
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Commits on Oct 27, 2023

  1. Use updated flashier interface

    @fmorgante
    fmorgante committed Oct 27, 2023
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  2. Bump up version

    @fmorgante
    fmorgante committed Oct 27, 2023
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Commits on Nov 15, 2023

  1. Fix bug

    @fmorgante
    fmorgante committed Nov 15, 2023
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  2. Minor improvement

    @fmorgante
    fmorgante committed Nov 15, 2023
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Commits on Jan 11, 2024

  1. Add tests for diagonal update of V

    @fmorgante
    fmorgante committed Jan 11, 2024
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Commits on Apr 24, 2024

  1. Merge branch 'rss_dev'

    @fmorgante
    fmorgante committed Apr 24, 2024
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  2. Fix merge conflicts

    @fmorgante
    fmorgante committed Apr 24, 2024
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  3. Fix bug

    @fmorgante
    fmorgante committed Apr 24, 2024
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Commits on Apr 26, 2024

  1. Revert to not using Rfast for the simulations

    @fmorgante
    fmorgante committed Apr 26, 2024
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  2. Bump up version

    @fmorgante
    fmorgante committed Apr 26, 2024
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  3. Remove remotes

    @fmorgante
    fmorgante committed Apr 26, 2024
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  4. Merge branch 'rss_dev'

    @fmorgante
    fmorgante committed Apr 26, 2024
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  5. Remove unused argument

    @fmorgante
    fmorgante committed Apr 26, 2024
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  6. Run devtools::document() and pkgdown::build_site()

    @fmorgante
    fmorgante committed Apr 26, 2024
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  7. Bump up version

    @fmorgante
    fmorgante committed Apr 26, 2024
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  8. Fix license and re-run pkgdown::build_site()

    @fmorgante
    fmorgante committed Apr 26, 2024
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Commits on Apr 28, 2024

  1. Minor changes/clean up

    @fmorgante
    fmorgante committed Apr 28, 2024
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  2. Add some input checks

    @fmorgante
    fmorgante committed Apr 28, 2024
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  3. Bump up version

    @fmorgante
    fmorgante committed Apr 28, 2024
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  4. Run devtools::document() and pkgdown::build_site()

    @fmorgante
    fmorgante committed Apr 28, 2024
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Commits on Apr 30, 2024

  1. Use TBB explicitly

    @fmorgante
    fmorgante committed Apr 30, 2024
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  2. Bump up version

    @fmorgante
    fmorgante committed Apr 30, 2024
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