extend testing to get_loci() #59
Workflow file for this run
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name: Build & publish Docker image for ParaStell CI | |
on: | |
# allows us to run workflows manually | |
workflow_dispatch: | |
push: | |
paths: | |
- 'Dockerfile' | |
- '.github/workflows/docker_publish.yml' | |
- 'environment.yml' | |
jobs: | |
build-dependency-img: | |
runs-on: ubuntu-latest | |
name: Install Dependencies | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v4 | |
- name: Set up Docker Buildx | |
uses: docker/setup-buildx-action@v3 | |
- name: Log into GitHub Container Registry | |
uses: docker/login-action@v3 | |
with: | |
registry: ghcr.io | |
username: ${{ github.repository_owner }} | |
password: ${{ secrets.GITHUB_TOKEN }} | |
- name: Build and push ParaStell Docker image | |
id: build-parastell | |
uses: docker/build-push-action@v5 | |
with: | |
cache-from: type=registry,ref=ghcr.io/svalinn/parastell:ci-layer-cache | |
cache-to: type=registry,ref=ghcr.io/svalinn/parastell:ci-layer-cache,mode=max | |
file: Dockerfile | |
push: true | |
target: parastell-deps | |
tags: ghcr.io/svalinn/parastell-ci | |
test-dependency-img: | |
needs: build-dependency-img | |
runs-on: ubuntu-latest | |
container: ghcr.io/svalinn/parastell-ci | |
name: Test CI Image | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v4 | |
- name: Populate environment and run tests | |
run: | | |
. /opt/etc/bashrc | |
sed -e "s/@SERVER@/${rlmSERVER}/" -e "s/@PASSWORD@/${rlmPASSWD}/" /opt/Coreform-Cubit-2023.11/bin/licenses/rlmcloud.in > /opt/Coreform-Cubit-2023.11/bin/licenses/rlmcloud.lic | |
export PYTHONPATH=${PYTHONPATH}:`pwd` | |
cd tests | |
pytest -v . | |
env: | |
rlmSERVER: ${{ secrets.RLMSERVER }} | |
rlmPASSWD: ${{ secrets.RLMPASSWORD }} |