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34 Open 53 Closed
34 Open 53 Closed
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Issues list

need python 3.12 release
#148 opened Sep 2, 2024 by fbergmann
1
Exemplar demonstration web interface for COMBINE archive annotations
#147 opened Apr 24, 2023 by nickerso
Support notes from SBML models
#146 opened Apr 24, 2023 by nickerso
Extend supported model formats to include CellML 2.0
#145 opened Apr 24, 2023 by nickerso
Segmentation fault/Exception error
#139 opened Feb 23, 2022 by luciansmith
2
Automatically creating http://omex-library.org/NewOmex.omex URIs is likely to generate confusion
#138 opened Oct 13, 2021 by jonrkarr
pxOmexMeta hangs on SBML-fbc models
#136 opened Sep 5, 2021 by jonrkarr
Align XML version between RDF.to_file and RDF.from_file
#135 opened Aug 23, 2021 by jonrkarr
2
Iteration over new Logger data structure crashes with segmentation faults
#134 opened Aug 23, 2021 by jonrkarr
Align the error codes printed to log console/files with the attribute names in eLogLevel
#133 opened Aug 23, 2021 by jonrkarr
Provide ability to temporarily configure the logger
#132 opened Aug 23, 2021 by jonrkarr
Think about exposing lower level interface (LibrdfUri, LibrdfNode, LibrdfStatement) to Python. Maybe best to use Swig?
#129 opened Aug 21, 2021 by CiaranWelsh
File Logger not working as expected
#128 opened Aug 21, 2021 by CiaranWelsh
9
RDF __eq__ method (equals_rdf_vs_rdf) should support non-RDF objects
#127 opened Aug 20, 2021 by jonrkarr
Add a "Model Level Annotations" section to the documentation
#114 opened Aug 2, 2021 by CiaranWelsh
pyomexmeta fails on 1% of SBML files from BioModels resolved-but-awaiting-confirmation When an issue has been handled but waiting on confirmation that problem is resolved.
#113 opened Jul 20, 2021 by jonrkarr
5
Semantic extraction from SBML fails with segmentation faults for example models resolved-but-awaiting-confirmation When an issue has been handled but waiting on confirmation that problem is resolved.
#107 opened Jul 19, 2021 by jonrkarr
4
Provide ability to get error messages for failures with pyomexmeta.pyomexmeta.Editor.get_xml started Began resolving this issue
#104 opened Jul 19, 2021 by jonrkarr
Provide ability to get error messages for failures with RDF.to_file started Began resolving this issue
#102 opened Jul 19, 2021 by jonrkarr
7
Validate that namespace URIs have trailing # or / started Began resolving this issue
#101 opened Jul 1, 2021 by jonrkarr
2
Use version suffix with omexManifest/content@format need-assistance
#100 opened Jul 1, 2021 by jonrkarr
2
What values are intended to be used for omexManifest/content@format? need-assistance
#99 opened Jul 1, 2021 by jonrkarr
3
Suggestion: recommend identifiers.org URIs where possible started Began resolving this issue
#98 opened Jul 1, 2021 by jonrkarr
5
What is the convention for defining namespaces for OMEX library and identifiers? need-assistance started Began resolving this issue
#96 opened Jun 24, 2021 by jonrkarr
4
Editing invalid XML generates segmentation faults
#94 opened Jun 24, 2021 by jonrkarr
1
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