Add config to WandB #705
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| # Continuous integration | |
| name: CI | |
| on: | |
| pull_request: | |
| types: [opened, reopened, synchronize] | |
| paths: | |
| - "sleap_nn/**" | |
| - "tests/**" | |
| - ".github/workflows/ci.yml" | |
| - "environment_cpu.yml" | |
| - "environment_mac.yml" | |
| - "pyproject.toml" | |
| defaults: | |
| # This is needed for running steps within conda environments. | |
| run: | |
| shell: bash -l {0} | |
| jobs: | |
| # Lint with black, docstring check with pydocstyle, static type checking with mypy | |
| lint: | |
| # This job runs: | |
| # | |
| # 1. Linting with black | |
| # | |
| # 2. Docstring style checking with pydocstyle | |
| # Note: This uses Google-style docstring convention | |
| # Ref: https://google.github.io/styleguide/pyguide.html | |
| name: Lint | |
| runs-on: "ubuntu-latest" | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| - name: Install dependencies | |
| run: | | |
| pip install --editable .[dev] | |
| - name: Run Black | |
| run: | | |
| black --check sleap_nn tests | |
| - name: Run ruff | |
| run: | | |
| ruff check sleap_nn/ | |
| # Tests with pytest | |
| tests: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest", "windows-latest", "macos-14"] | |
| python: [3.9] | |
| include: | |
| # Default values | |
| - env_file: environment_cpu.yml | |
| # Mac specific values | |
| - os: macos-14 | |
| env_file: environment_mac.yml | |
| name: Tests (${{ matrix.os }}, Python ${{ matrix.python }}) | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v3 | |
| - name: Setup Conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniforge-version: latest | |
| conda-solver: "libmamba" | |
| environment-file: ${{ matrix.env_file }} | |
| activate-environment: sleap-nn | |
| python-version: ${{ matrix.python }} | |
| - name: Print environment info | |
| shell: bash -l {0} | |
| run: | | |
| which python | |
| conda info | |
| conda list | |
| pip freeze | |
| - name: Test with pytest (with coverage) | |
| shell: bash -l {0} | |
| run: | | |
| pytest --cov=sleap_nn --cov-report=xml --durations=-1 tests/ | |
| - name: Upload coverage | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| fail_ci_if_error: true | |
| verbose: false | |
| token: ${{ secrets.CODECOV_TOKEN }} |