fix: fix test settings

tatonetti-lab · Sep 9, 2024 · eb21ccc · eb21ccc
1 parent 58546e6
commit eb21ccc
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Showing 3 changed files with 7 additions and 64 deletions.
diff --git a/src/webgwas_backend/test.py b/src/webgwas_backend/test.py
diff --git a/src/webgwas_backend/test_main.py b/src/webgwas_backend/test_main.py
@@ -131,11 +131,16 @@ def get_session_override():
 @pytest.fixture
 def client():
     settings = Settings(
+        log_level="DEBUG",
         dry_run=True,
         s3_bucket="TEST",
+        s3_result_path="TEST",
         sqlite_db=":memory:",
-        n_workers=2,
+        n_workers=1,
+        fit_quality_file=pathlib.Path(":memory:"),
+        root_data_directory=pathlib.Path(":memory:"),
         indirect_gwas=IndirectGWASSettings(),
+        cache_capacity=1,
     )
     worker = TestWorker(settings)
 

diff --git a/src/webgwas_backend/worker.py b/src/webgwas_backend/worker.py
@@ -95,6 +95,7 @@ def __init__(self, settings: Settings):
         self.s3_dry_run = settings.dry_run
         self.s3_bucket = settings.s3_bucket
         self.s3_result_path = settings.s3_result_path
+        self.root_data_directory = settings.root_data_directory
         self.id_to_result: dict[str, WebGWASResult] = {}
 
     def submit(self, request: WebGWASRequestID):