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Philip Jonsson edited this page Oct 22, 2019
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FACETS is a tool for analysis of allele-specific copy-number for paired tumor-normal DNA-sequencing data from genome-wide and targeted assays. It was developed by Ronglai Shen and Venkatraman Seshan. For questions about the FACETS algorithm, check out the repository and the paper.
facetsSuite is an R package with functions that wraps the essential functionality of FACETS and provides additional tools for plotting and post-hoc analyses. Basic instructions for running FACETS and using these tools are in the readme on the frontpage. More details are provided within these pages.