Merge pull request #10 from taylor-lab/feature/add_Docker_Config

Add docker config file
taylor-lab · Dec 10, 2019 · 9aa879f · 9aa879f
2 parents 2f9388b + 01e855b
commit 9aa879f
Showing 1 changed file with 12 additions and 0 deletions.
diff --git a/neoantigen-docker.config b/neoantigen-docker.config
@@ -0,0 +1,12 @@
+[Reference Paths]
+GRCh37cds: ./Homo_sapiens.GRCh37.75.cds.all.fa.gz
+GRCh37cdna: ./Homo_sapiens.GRCh37.75.cdna.all.fa.gz
+
+[NetMHCpan]
+
+netmhc4_bin_path: /usr/local/bin/netMHC-4.0/netMHC
+netmhc4_alleleslist: /usr/local/bin/netMHC-4.0/data/allelelist
+netmhcpan4_bin_path: /usr/local/bin/netMHCpan-4.0/netMHCpan
+
+[POLYSOLVER]
+polysolver_bin: ~/polysolver/shell_call_hla_type_singularity