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1. blast_pipeline blast_pipeline Public

   My python scripts for making a multiple sequence alignment.

   Python 3 1

2. bam_pipeline bam_pipeline Public

   A SLURM job submission script for creating bam files from paired-end fastq files.

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3. variant_calling_pipeline variant_calling_pipeline Public

   My variant calling pipeline for bacteria

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4. r_scripts r_scripts Public

   R scripts for genomics and phylogenetic visualization

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5. phylogenetic_scripts phylogenetic_scripts Public

   Scripts to help with phylogenetic analysis

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6. phylophun phylophun Public

   A python package to download and manipulate files for phylogenetic analysis

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