change the default topaz path back

tbepler · Feb 21, 2021 · 6cc1498 · 6cc1498
1 parent 343d655
commit 6cc1498
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/relion_run_topaz/run_topaz_pick.py b/relion_run_topaz/run_topaz_pick.py
@@ -27,7 +27,7 @@
 """VARIABLES >>>"""
 print('running ...')
 parser = argparse.ArgumentParser()
-parser.add_argument("-t", "-tpath", "--topaz_path" , type=str, default='/secondary/projects/lu/Zheng/software/conda/anaconda3/envs/topaz/bin/topaz', help = "Topaz path. Input either a direct path to a topaz executable or a directory path where topaz exists.")
+parser.add_argument("-t", "-tpath", "--topaz_path" , type=str, default='/usr/local/bin/topaz', help = "Topaz path. Input either a direct path to a topaz executable or a directory path where topaz exists.")
 parser.add_argument("-i", "--input", "--in_mics", help = "Input micrographs")
 parser.add_argument("-o", "--output", type=str, help = "Output folder (full path)")
 parser.add_argument("-d", "--device", type=int, default=0, help = "GPU/CPU devide. Non-negative numbers correspond to GPU IDs. Negative numbers correspond to CPU processing.")