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Deep clustering of Mass Spec imaging data. Pytroch implementation adapted to work with varying image sizes.

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Deep mzClustering

Implementation of the mzClustering Algorithm from the publication "A noise-robust deep clustering of biomolecular ions improves interpretability of mass spectrometric images" 2023 Bioinformatics

The original implementation from the authors was not functional at commit d63a469. The code was missing functions (e.g. pseudo_labeling) and many dimensions were hardcoded (only working with 40x40 images).

I forked of the original code and implemented support for varying image sizes, wrote all missing functions, and fixed other minor issues. Furthermore, I improved compatibility with METASPACE datasets.

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Deep clustering of Mass Spec imaging data. Pytroch implementation adapted to work with varying image sizes.

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  • Jupyter Notebook 67.6%
  • Python 32.4%