Merge pull request #17 from alisterburt/minor-refactor2

tiny refactor 2
teamtomo · Jun 1, 2022 · ab9beda · ab9beda
2 parents 38d0cac + 4417803
commit ab9beda
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/lil_aretomo/aretomo.py b/lil_aretomo/aretomo.py
@@ -65,7 +65,7 @@ def run_aretomo_alignment(
         binning=binning,
         aretomo_executable=aretomo_executable,
         nominal_rotation_angle=nominal_rotation_angle,
-        local_align=local_align,
+        local_alignments=local_align,
         n_patches_xy=n_patches_xy,
         thickness_for_alignment=thickness_for_alignment
     )
diff --git a/lil_aretomo/utils.py b/lil_aretomo/utils.py
@@ -31,7 +31,7 @@ def align_tilt_series_aretomo(
         binning: float,
         aretomo_executable: Path,
         nominal_rotation_angle: bool or float,
-        local_align: bool,
+        local_alignments: bool,
         n_patches_xy: tuple[int, int],
         thickness_for_alignment: float
 ):
@@ -54,7 +54,7 @@ def align_tilt_series_aretomo(
         command.append('-TiltAxis')
         command.append(f'{nominal_rotation_angle}')
 
-    if local_align:
+    if local_alignments is True:
         command.append('-Patch')
         command.append(f'{n_patches_xy[0]}')
         command.append(f'{n_patches_xy[1]}')