chore: populate template contents

CHANGES

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+
+## Fri Apr 12 00:00:00 2024 - TemplateFlow Manager Upload
+Populated contents after NIfTI sanitizing by the TF Manager.
+

LICENSE

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+Copyright (C) 2006-2023 Diedrichsenlab, Western University, London, Ontario, Canada
+
+The SUIT template, associated files and atlases are distributed under a Creative Commons Attribution-NonCommercial 3.0 Unported License, meaning that it can be freely used for non-commercial purposes, as long as proper attribution in form of
+acknowledgments and links (for online use) or citations (in publications) are given.
+Permission to use, copy, modify, and distribute this software and its
+documentation for any purpose and without fee is hereby granted,
+provided that the above copyright notice appears in all copies.
+The author and Western University make no representations about the
+suitability of this software for any purpose.
+It is provided "as is" without express or implied warranty.
+The authors are not responsible for any data loss, equipment damage,
+property loss, or injury to subjects or patients resulting from the
+use or misuse of this software package.

README.md

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+The SUIT template is a cerebellar-only template developed by the Diedrichsen lab (Western University). 
+The template is based on the scans from 20 healthy, young individuals. 
+
+Additional, we have developed a flatmap representation for data visualization. Note that this is based only on a outer hull surface appropriate for visualization of functional data - not an attempt of a complete unfolding of the cerebellum. 
+
+For use of the template and flat map, please cite: 
+
+Diedrichsen, J. (2006). A spatially unbiased atlas template of the human cerebellum.
+Neuroimage.  33(1, 127-138.
+
+Diedrichsen, J. & Zotow, E. (2015). Surface-based display of volume-averaged cerebellar data. PLoS One, 7, e0133402.
+
+For more information, please see: https://www.diedrichsenlab.org/imaging/suit.htm

template_description.json

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+{
+  "Authors": [
+    "Diedrichsen J"
+  ],
+  "BIDSVersion": "1.1.0",
+  "Curators": [
+    "Diedrichsen J",
+    "Esteban O"
+  ],
+  "Identifier": "SUIT",
+  "License": "See LICENSE file",
+  "Name": "Spatially Unbiased Infratentorial Template (SUIT)",
+  "ReferencesAndLinks": [
+    "https://doi.org/10.1016/j.neuroimage.2006.05.056",
+    "https://doi.org/10.1371/journal.pone.0133402",
+    "http://www.diedrichsenlab.org/imaging/suit.htm"
+  ],
+  "Species": "Homo sapiens",
+  "TemplateFlowVersion": "1.0.0",
+  "res": {
+    "1": {
+      "origin": [
+        -70.0,
+        -100.0,
+        -75.0
+      ],
+      "shape": [
+        141,
+        95,
+        87
+      ],
+      "zooms": [
+        1.0,
+        1.0,
+        1.0
+      ]
+    }
+  }
+}

tpl-SUIT_T1w.nii.gz

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+.git/annex/objects/kF/1j/MD5E-s384901--b5d02f6ea8533953ee7d8eeafcb3e795.nii.gz/MD5E-s384901--b5d02f6ea8533953ee7d8eeafcb3e795.nii.gz

tpl-SUIT_atlas-Buckner2011_dseg.json

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+{
+  "Authors": [
+    "Buckner, R.L.",
+    "Krienen, F.",
+    "Castellanos, A.",
+    "Diaz, J C",
+    "Yeo, B T"
+  ],
+  "BIDSVersion": "1.1.0",
+  "Curators": [
+    "Diedrichsen J"
+  ],
+  "Identifier": "Buckner",
+  "Maps": ["atl-Buckner7","atl-Buckner17"],
+  "Type": [
+  	"dseg",
+  	"dseg"
+  ],
+  "MapDesc": [
+    "Assignment of cerebellar voxels to the 7 network parcellation",
+    "Assignment of cerebellar voxels to the 17 network parcellation"
+  ],
+  "License": "See LICENSE file",
+  "Name": "Resting state network parcellation",
+  "ShortDesc": "Resting state network partcellation: Buckner et al. (2011)",   "LongDesc": "Buckner et al. (2011) presented the first comprehensive functional atlas of the human cerebellum, based on the correlation of each cerebellar voxel and with the 7 or 17 cortical resting state networks, described in Yeo et al. Parcellation is based on the data from 1000 subjects. ",
+  "ReferencesAndLinks": [
+    "Buckner, R. L., Krienen, F. M., Castellanos, A., Diaz, J. C. & Yeo, B. T. (2011). The organization of the human cerebellum estimated by intrinsic functional connectivity. J Neurophysiol 106, 2322–2345."
+  ],
+  "res": {} 
+}

tpl-SUIT_atlas-Buckner2011_seg-17n_dseg.label.gii

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+.git/annex/objects/fz/zm/MD5E-s9673--eeac23f61557f6b49d7ccc0f5cba97f8.gii/MD5E-s9673--eeac23f61557f6b49d7ccc0f5cba97f8.gii

tpl-SUIT_atlas-Buckner2011_seg-17n_dseg.nii.gz

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+.git/annex/objects/p3/7F/MD5E-s51668--fc5e16f814b18f7ad2e2dc4ecc9daa8b.nii.gz/MD5E-s51668--fc5e16f814b18f7ad2e2dc4ecc9daa8b.nii.gz

tpl-SUIT_atlas-Buckner2011_seg-17n_dseg.tsv

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+index	name	color
+1	Network_1	#b52bd4
+2	Network_2	#ff0000
+3	Network_3	#a1e1ff
+4	Network_4	#6cffc2
+5	Network_5	#4ac33b
+6	Network_6	#1f911b
+7	Network_7	#ff77ff
+8	Networks_8	#ffacd2
+9	Networks_9	#f4ffc4
+10	Network_10	#9ebc46
+11	Network_11	#99acc6
+12	Network_12	#f9a41e
+13	Network_13	#cd466a
+14	Network_14	#aeb8ff
+15	Network_15	#3334ff
+16	Network_16	#ffff00
+17	Network_17	#ff7d82

tpl-SUIT_atlas-Buckner2011_seg-17n_stat-confidence_dseg.nii.gz

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+.git/annex/objects/Qz/Xz/MD5E-s776409--4cc0e679ccc52d0e2f424ec93cec2a33.nii.gz/MD5E-s776409--4cc0e679ccc52d0e2f424ec93cec2a33.nii.gz

tpl-SUIT_atlas-Buckner2011_seg-7n_dseg.label.gii

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+.git/annex/objects/qg/Vx/MD5E-s7753--560dee145022d6056c03b85d0e65945a.gii/MD5E-s7753--560dee145022d6056c03b85d0e65945a.gii

tpl-SUIT_atlas-Buckner2011_seg-7n_dseg.nii.gz

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+.git/annex/objects/zG/1X/MD5E-s48776--40adf4992556482a7bc58f6e6e74a910.nii.gz/MD5E-s48776--40adf4992556482a7bc58f6e6e74a910.nii.gz

tpl-SUIT_atlas-Buckner2011_seg-7n_dseg.tsv

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+index	name	color
+1	Network1	#771286
+2	Network2	#4682b4
+3	Network3	#00760e
+4	Network4	#c43afa
+5	Network5	#dcf8a4
+6	Netowrk6	#e69422
+7	Network7	#cc3e4e

tpl-SUIT_atlas-Buckner2011_seg-7n_stat-confidence_dseg.nii.gz

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+.git/annex/objects/Pj/6V/MD5E-s978042--ad2830453c204df20d4bed6568ed3ef1.nii.gz/MD5E-s978042--ad2830453c204df20d4bed6568ed3ef1.nii.gz

tpl-SUIT_atlas-Diedrichsen2009_dseg.json

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+{
+  "Authors": [
+    "Diedrichsen, J",
+    "Balsters, J H",
+    "Flavell, J",
+    "Cussans, E",
+    "Ramnani,N"
+  ],
+  "BIDSVersion": "1.1.0",
+  "Curators": [
+    "Diedrichsen J"
+  ],
+  "Maps": [
+  	"atl-Anatom"
+  ],
+  "Type": [
+  	"dseg"
+  ],
+  "MapDesc": [
+    "Number of most probable compartment, Lobules and Nuclei"],
+  "Identifier": "Anatom",
+  "License": "See LICENSE file",
+  "Name": "Probabilistic atlas of cerebellar lobules",
+  "ShortDesc": "Probabilistic atlas for cerebellar lobules and nuclei: Diedrichsen (2009)",
+  "LongDesc": "The anatomical definitions are based on the fMRI atlas of an individual cerebellum by Schmahmann et al. (2000). We manually identified the main lobules on MRI scans of 20 healthy young participants (ROIs 1-28). Using a different set of 23 participants, we also identified the deep cerebellar nuclei (ROIs 29-34).",
+  "ReferencesAndLinks": [
+    "Diedrichsen, J., Balsters, J. H., Flavell, J., Cussans, E., & Ramnani, N. (2009). A probabilistic atlas of the human cerebellum. Neuroimage.",
+    "Diedrichsen, J., Maderwald, S., Kuper, M., Thurling, M., Rabe, K., Gizewski, E. R., et al. (2011). Imaging the deep cerebellar nuclei: A probabilistic atlas and normalization procedure. Neuroimage.", 
+    "http://www.diedrichsenlab.org/imaging/propatlas.htm"
+  ],
+  "res": {}
+}

tpl-SUIT_atlas-Diedrichsen2009_dseg.label.gii

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+.git/annex/objects/Vv/vg/MD5E-s10597--3a2cef7eae67938f4a818bf8e6a0e381.gii/MD5E-s10597--3a2cef7eae67938f4a818bf8e6a0e381.gii

tpl-SUIT_atlas-Diedrichsen2009_dseg.nii.gz

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+.git/annex/objects/Qw/37/MD5E-s44305--262bae4eac672d9b0d15c99446b0343c.nii.gz/MD5E-s44305--262bae4eac672d9b0d15c99446b0343c.nii.gz

tpl-SUIT_atlas-Diedrichsen2009_dseg.tsv

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+index	name	color
+1	Left_I_IV	#ccff00
+2	Right_I_IV	#b8e600
+3	Left_V	#00e65c
+4	Right_V	#00ff66
+5	Left_VI	#0066ff
+6	Vermis_VI	#0052cc
+7	Right_VI	#0066ff
+8	Left_CrusI	#cc00ff
+9	Vermis_CrusI	#a200cc
+10	Right_CrusI	#cc00ff
+11	Left_CrusII	#ff0000
+12	Vermis_CrusII	#cc0000
+13	Right_CrusII	#ff0000
+14	Left_VIIb	#ff9900
+15	Vermis_VIIb	#cc7900
+16	Right_VIIb	#ff9900
+17	Left_VIIIa	#33ff00
+18	Vermis_VIIIa	#29cc00
+19	Right_VIIIa	#33ff00
+20	Left_VIIIb	#00ffff
+21	Vermis_VIIIb	#00cccc
+22	Right_VIIIb	#00ffff
+23	Left_IX	#3300ff
+24	Vermis_IX	#2900cc
+25	Right_IX	#3300ff
+26	Left_X	#ff0099
+27	Vermis_X	#cc0079
+28	Right_X	#ff0099
+29	Left_Dentate	#4c4c4c
+30	Right_Dentate	#4c4c4c
+31	Left_Interposed	#7f7f7f
+32	Right_Interposed	#7f7f7f
+33	Left_Fastigial	#b2b2b2
+34	Right_Fastigial	#b2b2b2

tpl-SUIT_atlas-Diedrichsen2009_probseg.nii.gz

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+.git/annex/objects/m3/zp/MD5E-s1768553--ee5ae374e732649a375ae285749a953a.nii.gz/MD5E-s1768553--ee5ae374e732649a375ae285749a953a.nii.gz

tpl-SUIT_flat.surf.gii

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+.git/annex/objects/JG/23/MD5E-s590551--ede2ad2d0a4dc0dd28c1bfcb136fa78a.surf.gii/MD5E-s590551--ede2ad2d0a4dc0dd28c1bfcb136fa78a.surf.gii

tpl-SUIT_sulc.shape.gii

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+.git/annex/objects/Gj/zQ/MD5E-s147139--4e95c645d0138a04b0eba898aab09022.gii/MD5E-s147139--4e95c645d0138a04b0eba898aab09022.gii